Strain Fitness in Dechlorosoma suillum PS around Dsui_2780

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2779 and Dsui_2780 are separated by 13 nucleotidesDsui_2780 and Dsui_2781 are separated by 14 nucleotides Dsui_2779: Dsui_2779 - PAS domain S-box, at 2,941,708 to 2,944,797 _2779 Dsui_2780: Dsui_2780 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,944,811 to 2,945,245 _2780 Dsui_2781: Dsui_2781 - PAS domain S-box, at 2,945,260 to 2,949,126 _2781 Position (kb) 2944 2945 2946Strain fitness (log2 ratio) -1 0 1at 2944.241 kb on - strandat 2944.509 kb on - strandat 2944.515 kb on + strandat 2944.756 kb on - strandat 2944.783 kb on + strandat 2944.791 kb on - strandat 2944.801 kb on - strandat 2945.170 kb on - strandat 2945.170 kb on - strand, within Dsui_2780at 2945.212 kb on - strandat 2945.462 kb on + strandat 2945.924 kb on - strandat 2945.968 kb on + strandat 2946.109 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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2,944,241 - +0.5
2,944,509 - +0.5
2,944,515 + +0.5
2,944,756 - -1.1
2,944,783 + +0.5
2,944,791 - -0.5
2,944,801 - -0.5
2,945,170 - +0.5
2,945,170 - Dsui_2780 0.83 -1.5
2,945,212 - -0.5
2,945,462 + +0.5
2,945,924 - +0.5
2,945,968 + -0.5
2,946,109 + +0.5

Or see this region's nucleotide sequence