Strain Fitness in Dechlorosoma suillum PS around Dsui_2737

Experiment: ALP with perchlorate 6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2735 and Dsui_2736 are separated by 51 nucleotidesDsui_2736 and Dsui_2737 are separated by 63 nucleotidesDsui_2737 and Dsui_2738 overlap by 8 nucleotidesDsui_2738 and Dsui_2739 are separated by 129 nucleotidesDsui_2739 and Dsui_2740 are separated by 24 nucleotides Dsui_2735: Dsui_2735 - glycine cleavage system T protein, at 2,889,524 to 2,890,615 _2735 Dsui_2736: Dsui_2736 - glycine cleavage system H protein, at 2,890,667 to 2,891,053 _2736 Dsui_2737: Dsui_2737 - glycine dehydrogenase, decarboxylating, at 2,891,117 to 2,894,017 _2737 Dsui_2738: Dsui_2738 - glycine cleavage system regulatory protein, at 2,894,010 to 2,894,537 _2738 Dsui_2739: Dsui_2739 - pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component, at 2,894,667 to 2,894,936 _2739 Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698 _2740 Position (kb) 2891 2892 2893 2894 2895Strain fitness (log2 ratio) -2 -1 0 1at 2890.164 kb on - strandat 2890.169 kb on - strand, within Dsui_2735at 2890.233 kb on + strand, within Dsui_2735at 2890.291 kb on + strand, within Dsui_2735at 2890.291 kb on + strand, within Dsui_2735at 2890.294 kb on - strand, within Dsui_2735at 2890.306 kb on + strand, within Dsui_2735at 2890.314 kb on - strandat 2890.377 kb on + strand, within Dsui_2735at 2890.390 kb on + strand, within Dsui_2735at 2890.397 kb on + strand, within Dsui_2735at 2890.398 kb on - strandat 2890.473 kb on + strand, within Dsui_2735at 2890.481 kb on - strand, within Dsui_2735at 2890.481 kb on - strand, within Dsui_2735at 2890.498 kb on - strandat 2890.563 kb on + strandat 2890.597 kb on + strandat 2890.604 kb on + strandat 2890.612 kb on - strandat 2890.614 kb on + strandat 2890.622 kb on - strandat 2890.622 kb on - strandat 2890.662 kb on + strandat 2890.675 kb on + strandat 2890.676 kb on + strandat 2890.762 kb on + strand, within Dsui_2736at 2890.772 kb on + strand, within Dsui_2736at 2890.780 kb on - strandat 2890.818 kb on - strand, within Dsui_2736at 2890.818 kb on - strandat 2890.938 kb on + strand, within Dsui_2736at 2890.959 kb on + strand, within Dsui_2736at 2891.061 kb on + strandat 2891.066 kb on + strandat 2891.071 kb on + strandat 2891.116 kb on - strandat 2891.119 kb on + strandat 2891.119 kb on + strandat 2891.321 kb on + strandat 2891.389 kb on + strandat 2891.415 kb on + strand, within Dsui_2737at 2891.447 kb on + strand, within Dsui_2737at 2891.451 kb on + strand, within Dsui_2737at 2891.474 kb on - strand, within Dsui_2737at 2891.544 kb on + strand, within Dsui_2737at 2891.717 kb on - strand, within Dsui_2737at 2891.761 kb on - strandat 2891.798 kb on + strand, within Dsui_2737at 2891.906 kb on - strand, within Dsui_2737at 2892.137 kb on - strand, within Dsui_2737at 2892.163 kb on - strand, within Dsui_2737at 2892.247 kb on + strand, within Dsui_2737at 2892.247 kb on + strand, within Dsui_2737at 2892.328 kb on + strand, within Dsui_2737at 2892.328 kb on + strand, within Dsui_2737at 2892.334 kb on - strand, within Dsui_2737at 2892.336 kb on - strandat 2892.351 kb on + strand, within Dsui_2737at 2892.351 kb on + strand, within Dsui_2737at 2892.536 kb on + strand, within Dsui_2737at 2892.633 kb on - strand, within Dsui_2737at 2892.657 kb on + strand, within Dsui_2737at 2892.753 kb on + strand, within Dsui_2737at 2892.891 kb on + strand, within Dsui_2737at 2892.944 kb on - strand, within Dsui_2737at 2892.978 kb on - strand, within Dsui_2737at 2893.027 kb on + strand, within Dsui_2737at 2893.072 kb on + strand, within Dsui_2737at 2893.158 kb on - strand, within Dsui_2737at 2893.164 kb on + strand, within Dsui_2737at 2893.217 kb on + strand, within Dsui_2737at 2893.402 kb on - strandat 2893.532 kb on + strand, within Dsui_2737at 2893.535 kb on - strand, within Dsui_2737at 2893.552 kb on - strand, within Dsui_2737at 2893.898 kb on + strandat 2894.086 kb on + strand, within Dsui_2738at 2894.089 kb on + strand, within Dsui_2738at 2894.161 kb on - strand, within Dsui_2738at 2894.350 kb on + strand, within Dsui_2738at 2894.388 kb on + strand, within Dsui_2738at 2894.388 kb on - strand, within Dsui_2738at 2894.491 kb on - strandat 2894.564 kb on + strandat 2894.619 kb on + strandat 2894.651 kb on + strandat 2894.659 kb on - strandat 2894.702 kb on - strand, within Dsui_2739at 2894.774 kb on - strand, within Dsui_2739at 2894.837 kb on - strand, within Dsui_2739at 2894.839 kb on + strandat 2895.004 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
remove
2,890,164 - -0.5
2,890,169 - Dsui_2735 0.59 -0.5
2,890,233 + Dsui_2735 0.65 -0.2
2,890,291 + Dsui_2735 0.70 -0.0
2,890,291 + Dsui_2735 0.70 +0.1
2,890,294 - Dsui_2735 0.71 -1.5
2,890,306 + Dsui_2735 0.72 -0.2
2,890,314 - +0.5
2,890,377 + Dsui_2735 0.78 -0.1
2,890,390 + Dsui_2735 0.79 -0.1
2,890,397 + Dsui_2735 0.80 -0.1
2,890,398 - +0.5
2,890,473 + Dsui_2735 0.87 -0.3
2,890,481 - Dsui_2735 0.88 -1.1
2,890,481 - Dsui_2735 0.88 +0.5
2,890,498 - +0.5
2,890,563 + +0.0
2,890,597 + +0.5
2,890,604 + +0.2
2,890,612 - -1.1
2,890,614 + -0.1
2,890,622 - -0.5
2,890,622 - +0.5
2,890,662 + -0.6
2,890,675 + -0.4
2,890,676 + -0.6
2,890,762 + Dsui_2736 0.25 -0.2
2,890,772 + Dsui_2736 0.27 -0.9
2,890,780 - +0.5
2,890,818 - Dsui_2736 0.39 -1.1
2,890,818 - +0.5
2,890,938 + Dsui_2736 0.70 -0.7
2,890,959 + Dsui_2736 0.75 -0.5
2,891,061 + +0.2
2,891,066 + -0.4
2,891,071 + -0.4
2,891,116 - +0.5
2,891,119 + -1.5
2,891,119 + -0.1
2,891,321 + +0.5
2,891,389 + -1.1
2,891,415 + Dsui_2737 0.10 -1.1
2,891,447 + Dsui_2737 0.11 -2.1
2,891,451 + Dsui_2737 0.12 +0.5
2,891,474 - Dsui_2737 0.12 -0.5
2,891,544 + Dsui_2737 0.15 -0.5
2,891,717 - Dsui_2737 0.21 -1.1
2,891,761 - +0.5
2,891,798 + Dsui_2737 0.23 -1.5
2,891,906 - Dsui_2737 0.27 +0.5
2,892,137 - Dsui_2737 0.35 +0.5
2,892,163 - Dsui_2737 0.36 +0.5
2,892,247 + Dsui_2737 0.39 -1.0
2,892,247 + Dsui_2737 0.39 +1.1
2,892,328 + Dsui_2737 0.42 -1.1
2,892,328 + Dsui_2737 0.42 +0.7
2,892,334 - Dsui_2737 0.42 -0.5
2,892,336 - -0.5
2,892,351 + Dsui_2737 0.43 +0.5
2,892,351 + Dsui_2737 0.43 +0.5
2,892,536 + Dsui_2737 0.49 +0.0
2,892,633 - Dsui_2737 0.52 -0.5
2,892,657 + Dsui_2737 0.53 -0.5
2,892,753 + Dsui_2737 0.56 -0.5
2,892,891 + Dsui_2737 0.61 +0.5
2,892,944 - Dsui_2737 0.63 -1.1
2,892,978 - Dsui_2737 0.64 -2.6
2,893,027 + Dsui_2737 0.66 +0.5
2,893,072 + Dsui_2737 0.67 -0.5
2,893,158 - Dsui_2737 0.70 +0.5
2,893,164 + Dsui_2737 0.71 +0.5
2,893,217 + Dsui_2737 0.72 -0.2
2,893,402 - +0.5
2,893,532 + Dsui_2737 0.83 -0.5
2,893,535 - Dsui_2737 0.83 +0.5
2,893,552 - Dsui_2737 0.84 +0.5
2,893,898 + +0.5
2,894,086 + Dsui_2738 0.14 -0.5
2,894,089 + Dsui_2738 0.15 +0.5
2,894,161 - Dsui_2738 0.29 +0.5
2,894,350 + Dsui_2738 0.64 -0.8
2,894,388 + Dsui_2738 0.72 -0.1
2,894,388 - Dsui_2738 0.72 -1.1
2,894,491 - -1.1
2,894,564 + -0.5
2,894,619 + +0.5
2,894,651 + -0.5
2,894,659 - +0.5
2,894,702 - Dsui_2739 0.13 +0.5
2,894,774 - Dsui_2739 0.40 +0.5
2,894,837 - Dsui_2739 0.63 +0.5
2,894,839 + +0.5
2,895,004 - -0.5

Or see this region's nucleotide sequence