Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2394 and Dsui_2395 are separated by 19 nucleotides Dsui_2395 and Dsui_2396 overlap by 4 nucleotides Dsui_2396 and Dsui_2397 are separated by 112 nucleotides Dsui_2397 and Dsui_2398 are separated by 25 nucleotides
Dsui_2394: Dsui_2394 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,545,815 to 2,548,775
_2394
Dsui_2395: Dsui_2395 - hypothetical protein, at 2,548,795 to 2,549,112
_2395
Dsui_2396: Dsui_2396 - putative domain HDIG-containing protein, at 2,549,109 to 2,549,951
_2396
Dsui_2397: Dsui_2397 - cAMP-binding protein, at 2,550,064 to 2,550,780
_2397
Dsui_2398: Dsui_2398 - hypothetical protein, at 2,550,806 to 2,551,801
_2398
Position (kb)
2549
2550 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2548.223 kb on + strand, within Dsui_2394 at 2548.341 kb on + strand, within Dsui_2394 at 2548.409 kb on + strand, within Dsui_2394 at 2548.486 kb on - strand at 2548.650 kb on - strand at 2548.712 kb on + strand at 2548.747 kb on - strand at 2548.873 kb on + strand, within Dsui_2395 at 2549.057 kb on + strand, within Dsui_2395 at 2549.060 kb on + strand, within Dsui_2395 at 2549.068 kb on - strand at 2549.068 kb on - strand, within Dsui_2395 at 2549.068 kb on - strand at 2549.143 kb on - strand at 2549.159 kb on - strand at 2549.210 kb on + strand, within Dsui_2396 at 2549.250 kb on - strand at 2549.276 kb on - strand at 2549.335 kb on + strand, within Dsui_2396 at 2549.339 kb on + strand, within Dsui_2396 at 2549.347 kb on - strand at 2549.395 kb on + strand, within Dsui_2396 at 2549.545 kb on + strand, within Dsui_2396 at 2549.586 kb on + strand, within Dsui_2396 at 2549.629 kb on - strand at 2549.646 kb on + strand, within Dsui_2396 at 2549.654 kb on - strand, within Dsui_2396 at 2549.669 kb on - strand, within Dsui_2396 at 2549.794 kb on + strand, within Dsui_2396 at 2549.800 kb on + strand, within Dsui_2396 at 2549.853 kb on + strand, within Dsui_2396 at 2549.915 kb on - strand at 2549.938 kb on + strand at 2550.036 kb on + strand at 2550.044 kb on + strand at 2550.049 kb on + strand at 2550.049 kb on + strand at 2550.059 kb on + strand at 2550.066 kb on + strand at 2550.093 kb on + strand at 2550.148 kb on + strand, within Dsui_2397 at 2550.206 kb on + strand, within Dsui_2397 at 2550.230 kb on + strand, within Dsui_2397 at 2550.357 kb on + strand, within Dsui_2397 at 2550.377 kb on + strand, within Dsui_2397 at 2550.379 kb on - strand at 2550.420 kb on - strand at 2550.460 kb on - strand, within Dsui_2397 at 2550.566 kb on + strand, within Dsui_2397 at 2550.566 kb on + strand, within Dsui_2397 at 2550.590 kb on + strand at 2550.603 kb on - strand, within Dsui_2397 at 2550.654 kb on - strand, within Dsui_2397 at 2550.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 2,548,223 + Dsui_2394 0.81 -0.2 2,548,341 + Dsui_2394 0.85 +0.2 2,548,409 + Dsui_2394 0.88 +0.3 2,548,486 - -2.7 2,548,650 - -1.6 2,548,712 + +0.2 2,548,747 - -2.6 2,548,873 + Dsui_2395 0.25 +0.2 2,549,057 + Dsui_2395 0.82 +0.3 2,549,060 + Dsui_2395 0.83 +0.2 2,549,068 - +0.4 2,549,068 - Dsui_2395 0.86 -1.6 2,549,068 - +0.4 2,549,143 - +0.4 2,549,159 - +0.4 2,549,210 + Dsui_2396 0.12 -0.0 2,549,250 - -0.6 2,549,276 - +0.4 2,549,335 + Dsui_2396 0.27 +0.6 2,549,339 + Dsui_2396 0.27 +0.3 2,549,347 - +0.4 2,549,395 + Dsui_2396 0.34 -0.2 2,549,545 + Dsui_2396 0.52 -0.1 2,549,586 + Dsui_2396 0.57 +0.8 2,549,629 - +0.4 2,549,646 + Dsui_2396 0.64 +0.2 2,549,654 - Dsui_2396 0.65 -0.6 2,549,669 - Dsui_2396 0.66 +0.4 2,549,794 + Dsui_2396 0.81 +0.2 2,549,800 + Dsui_2396 0.82 -0.1 2,549,853 + Dsui_2396 0.88 +0.4 2,549,915 - +0.4 2,549,938 + -0.2 2,550,036 + +0.2 2,550,044 + +0.2 2,550,049 + -0.0 2,550,049 + -0.3 2,550,059 + -0.0 2,550,066 + -0.3 2,550,093 + -0.0 2,550,148 + Dsui_2397 0.12 -1.1 2,550,206 + Dsui_2397 0.20 -2.7 2,550,230 + Dsui_2397 0.23 -2.7 2,550,357 + Dsui_2397 0.41 +0.0 2,550,377 + Dsui_2397 0.44 -1.3 2,550,379 - -1.1 2,550,420 - -0.5 2,550,460 - Dsui_2397 0.55 -1.1 2,550,566 + Dsui_2397 0.70 -0.5 2,550,566 + Dsui_2397 0.70 -0.5 2,550,590 + +0.5 2,550,603 - Dsui_2397 0.75 -3.0 2,550,654 - Dsui_2397 0.82 -0.5 2,550,723 + +0.5
Or see this region's nucleotide sequence