Strain Fitness in Dechlorosoma suillum PS around Dsui_2300

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2299 and Dsui_2300 are separated by 57 nucleotidesDsui_2300 and Dsui_2301 are separated by 180 nucleotides Dsui_2299: Dsui_2299 - flavin-dependent dehydrogenase, at 2,453,467 to 2,455,113 _2299 Dsui_2300: Dsui_2300 - hypothetical protein, at 2,455,171 to 2,455,863 _2300 Dsui_2301: Dsui_2301 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,456,044 to 2,458,458 _2301 Position (kb) 2455 2456Strain fitness (log2 ratio) -2 -1 0 1 2at 2454.205 kb on + strand, within Dsui_2299at 2454.223 kb on - strand, within Dsui_2299at 2454.388 kb on + strand, within Dsui_2299at 2454.415 kb on - strandat 2454.468 kb on + strand, within Dsui_2299at 2454.500 kb on + strand, within Dsui_2299at 2454.579 kb on + strand, within Dsui_2299at 2454.579 kb on + strand, within Dsui_2299at 2454.617 kb on - strandat 2454.752 kb on + strand, within Dsui_2299at 2454.754 kb on + strand, within Dsui_2299at 2454.762 kb on + strand, within Dsui_2299at 2454.770 kb on - strand, within Dsui_2299at 2454.871 kb on - strand, within Dsui_2299at 2454.873 kb on + strand, within Dsui_2299at 2454.933 kb on + strand, within Dsui_2299at 2455.006 kb on + strandat 2455.023 kb on + strandat 2455.023 kb on + strandat 2455.179 kb on - strandat 2455.184 kb on + strandat 2455.192 kb on - strandat 2455.210 kb on + strandat 2455.210 kb on + strandat 2455.238 kb on - strandat 2455.303 kb on + strand, within Dsui_2300at 2455.370 kb on + strandat 2455.437 kb on + strand, within Dsui_2300at 2455.464 kb on + strand, within Dsui_2300at 2455.464 kb on + strand, within Dsui_2300at 2455.590 kb on - strand, within Dsui_2300at 2455.604 kb on + strand, within Dsui_2300at 2455.647 kb on - strand, within Dsui_2300at 2455.666 kb on + strand, within Dsui_2300at 2455.666 kb on - strand, within Dsui_2300at 2455.721 kb on - strandat 2455.772 kb on - strand, within Dsui_2300at 2455.773 kb on - strandat 2455.848 kb on + strandat 2455.901 kb on + strandat 2455.901 kb on + strandat 2455.911 kb on + strandat 2455.919 kb on - strandat 2455.919 kb on - strandat 2456.015 kb on + strandat 2456.243 kb on + strandat 2456.420 kb on + strand, within Dsui_2301at 2456.439 kb on - strandat 2456.579 kb on - strand, within Dsui_2301at 2456.623 kb on + strandat 2456.631 kb on + strand, within Dsui_2301at 2456.637 kb on - strand, within Dsui_2301at 2456.787 kb on + strand, within Dsui_2301

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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2,454,205 + Dsui_2299 0.45 +0.3
2,454,223 - Dsui_2299 0.46 -0.5
2,454,388 + Dsui_2299 0.56 +0.3
2,454,415 - +0.5
2,454,468 + Dsui_2299 0.61 +0.3
2,454,500 + Dsui_2299 0.63 +0.2
2,454,579 + Dsui_2299 0.68 +0.3
2,454,579 + Dsui_2299 0.68 +0.3
2,454,617 - +0.5
2,454,752 + Dsui_2299 0.78 -0.5
2,454,754 + Dsui_2299 0.78 +0.1
2,454,762 + Dsui_2299 0.79 -1.5
2,454,770 - Dsui_2299 0.79 -0.5
2,454,871 - Dsui_2299 0.85 +0.5
2,454,873 + Dsui_2299 0.85 +1.1
2,454,933 + Dsui_2299 0.89 +0.7
2,455,006 + +2.7
2,455,023 + +0.5
2,455,023 + +0.5
2,455,179 - +0.5
2,455,184 + +0.5
2,455,192 - +0.5
2,455,210 + -0.5
2,455,210 + -1.1
2,455,238 - -0.5
2,455,303 + Dsui_2300 0.19 +0.5
2,455,370 + +0.5
2,455,437 + Dsui_2300 0.38 -0.5
2,455,464 + Dsui_2300 0.42 +0.5
2,455,464 + Dsui_2300 0.42 -1.8
2,455,590 - Dsui_2300 0.60 +0.5
2,455,604 + Dsui_2300 0.62 -1.1
2,455,647 - Dsui_2300 0.69 -1.1
2,455,666 + Dsui_2300 0.71 -1.1
2,455,666 - Dsui_2300 0.71 -1.8
2,455,721 - -0.5
2,455,772 - Dsui_2300 0.87 -1.1
2,455,773 - -0.5
2,455,848 + +0.5
2,455,901 + -0.5
2,455,901 + -1.1
2,455,911 + -1.5
2,455,919 - +0.5
2,455,919 - -0.5
2,456,015 + +0.5
2,456,243 + +0.5
2,456,420 + Dsui_2301 0.16 -1.8
2,456,439 - +0.5
2,456,579 - Dsui_2301 0.22 -1.1
2,456,623 + +0.5
2,456,631 + Dsui_2301 0.24 -0.5
2,456,637 - Dsui_2301 0.25 +0.5
2,456,787 + Dsui_2301 0.31 +0.5

Or see this region's nucleotide sequence