Strain Fitness in Dechlorosoma suillum PS around Dsui_2212

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2210 and Dsui_2211 are separated by 130 nucleotidesDsui_2211 and Dsui_2212 overlap by 7 nucleotidesDsui_2212 and Dsui_2213 are separated by 3 nucleotides Dsui_2210: Dsui_2210 - transcriptional regulator, at 2,349,352 to 2,350,092 _2210 Dsui_2211: Dsui_2211 - succinate dehydrogenase, cytochrome b556 subunit, at 2,350,223 to 2,350,615 _2211 Dsui_2212: Dsui_2212 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 2,350,609 to 2,350,956 _2212 Dsui_2213: Dsui_2213 - succinate dehydrogenase, flavoprotein subunit, at 2,350,960 to 2,352,753 _2213 Position (kb) 2350 2351Strain fitness (log2 ratio) -1 0 1at 2349.702 kb on + strand, within Dsui_2210at 2349.703 kb on + strand, within Dsui_2210at 2349.862 kb on + strand, within Dsui_2210at 2349.977 kb on + strand, within Dsui_2210at 2349.987 kb on + strand, within Dsui_2210at 2350.081 kb on + strandat 2350.088 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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2,349,702 + Dsui_2210 0.47 -0.6
2,349,703 + Dsui_2210 0.47 -0.7
2,349,862 + Dsui_2210 0.69 -0.0
2,349,977 + Dsui_2210 0.84 -0.6
2,349,987 + Dsui_2210 0.86 -0.4
2,350,081 + -0.4
2,350,088 + +0.1

Or see this region's nucleotide sequence