Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2137 and Dsui_2138 are separated by 35 nucleotides Dsui_2138 and Dsui_2139 are separated by 136 nucleotides Dsui_2139 and Dsui_2140 overlap by 4 nucleotides
Dsui_2137: Dsui_2137 - queuosine biosynthesis protein QueD, at 2,266,515 to 2,266,961
_2137
Dsui_2138: Dsui_2138 - putative esterase, at 2,266,997 to 2,267,665
_2138
Dsui_2139: Dsui_2139 - Protein of unknown function (DUF3348), at 2,267,802 to 2,268,530
_2139
Dsui_2140: Dsui_2140 - hypothetical protein, at 2,268,527 to 2,270,617
_2140
Position (kb)
2267
2268
2269 Strain fitness (log2 ratio)
-1
0
1 at 2266.808 kb on + strand, within Dsui_2137 at 2266.960 kb on + strand at 2266.987 kb on + strand at 2267.040 kb on + strand at 2267.045 kb on + strand at 2267.073 kb on - strand at 2267.118 kb on + strand, within Dsui_2138 at 2267.232 kb on + strand, within Dsui_2138 at 2267.497 kb on + strand, within Dsui_2138 at 2267.610 kb on + strand at 2267.707 kb on - strand at 2267.744 kb on + strand at 2267.745 kb on + strand at 2267.799 kb on - strand at 2268.130 kb on - strand at 2268.176 kb on - strand at 2268.290 kb on + strand, within Dsui_2139 at 2268.303 kb on + strand, within Dsui_2139 at 2268.349 kb on + strand, within Dsui_2139 at 2268.354 kb on + strand, within Dsui_2139 at 2268.432 kb on + strand, within Dsui_2139 at 2268.435 kb on + strand, within Dsui_2139 at 2268.552 kb on + strand at 2268.582 kb on + strand at 2268.587 kb on + strand at 2268.592 kb on + strand at 2268.601 kb on - strand at 2268.644 kb on + strand at 2268.664 kb on + strand at 2268.671 kb on - strand at 2268.697 kb on + strand at 2268.766 kb on - strand at 2268.931 kb on + strand, within Dsui_2140 at 2268.939 kb on + strand, within Dsui_2140 at 2268.939 kb on + strand, within Dsui_2140 at 2269.099 kb on - strand, within Dsui_2140 at 2269.431 kb on + strand, within Dsui_2140 at 2269.467 kb on + strand, within Dsui_2140
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 2,266,808 + Dsui_2137 0.66 +0.6 2,266,960 + +0.6 2,266,987 + +0.2 2,267,040 + +0.5 2,267,045 + +0.6 2,267,073 - -0.3 2,267,118 + Dsui_2138 0.18 +1.1 2,267,232 + Dsui_2138 0.35 +0.3 2,267,497 + Dsui_2138 0.75 +0.2 2,267,610 + +0.4 2,267,707 - -0.3 2,267,744 + +0.9 2,267,745 + +0.2 2,267,799 - +0.7 2,268,130 - +0.7 2,268,176 - +0.7 2,268,290 + Dsui_2139 0.67 +0.5 2,268,303 + Dsui_2139 0.69 +0.3 2,268,349 + Dsui_2139 0.75 +0.7 2,268,354 + Dsui_2139 0.76 -0.1 2,268,432 + Dsui_2139 0.86 +0.3 2,268,435 + Dsui_2139 0.87 +0.2 2,268,552 + -0.6 2,268,582 + +0.8 2,268,587 + +0.3 2,268,592 + +0.5 2,268,601 - -0.9 2,268,644 + +0.0 2,268,664 + +0.2 2,268,671 - -0.9 2,268,697 + -0.1 2,268,766 - +0.7 2,268,931 + Dsui_2140 0.19 +0.2 2,268,939 + Dsui_2140 0.20 +0.7 2,268,939 + Dsui_2140 0.20 +0.3 2,269,099 - Dsui_2140 0.27 -0.3 2,269,431 + Dsui_2140 0.43 +0.2 2,269,467 + Dsui_2140 0.45 -0.2
Or see this region's nucleotide sequence