Strain Fitness in Dechlorosoma suillum PS around Dsui_2095

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2094 and Dsui_2095 are separated by 72 nucleotidesDsui_2095 and Dsui_2096 are separated by 286 nucleotides Dsui_2094: Dsui_2094 - putative autotransporter protein, at 2,215,649 to 2,219,413 _2094 Dsui_2095: Dsui_2095 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,219,486 to 2,220,172 _2095 Dsui_2096: Dsui_2096 - methyl-accepting chemotaxis protein, at 2,220,459 to 2,222,066 _2096 Position (kb) 2219 2220 2221Strain fitness (log2 ratio) -2 -1 0 1at 2218.486 kb on + strand, within Dsui_2094at 2218.868 kb on + strand, within Dsui_2094at 2218.876 kb on - strandat 2219.023 kb on - strandat 2219.294 kb on + strandat 2219.491 kb on + strandat 2219.491 kb on + strandat 2219.533 kb on + strandat 2219.671 kb on - strandat 2219.778 kb on + strand, within Dsui_2095at 2219.782 kb on + strand, within Dsui_2095at 2219.946 kb on + strandat 2220.064 kb on - strandat 2220.161 kb on + strandat 2220.211 kb on + strandat 2220.316 kb on - strandat 2220.431 kb on - strandat 2220.451 kb on - strandat 2220.484 kb on + strandat 2220.676 kb on - strand, within Dsui_2096at 2220.712 kb on + strand, within Dsui_2096at 2220.734 kb on + strand, within Dsui_2096at 2220.741 kb on + strandat 2220.772 kb on + strand, within Dsui_2096at 2220.869 kb on + strand, within Dsui_2096at 2220.931 kb on - strand, within Dsui_2096at 2220.987 kb on + strand, within Dsui_2096at 2221.080 kb on + strand, within Dsui_2096at 2221.133 kb on + strand, within Dsui_2096at 2221.165 kb on + strand, within Dsui_2096

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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2,218,486 + Dsui_2094 0.75 -0.3
2,218,868 + Dsui_2094 0.85 +0.7
2,218,876 - +0.7
2,219,023 - -0.8
2,219,294 + +0.7
2,219,491 + +0.7
2,219,491 + -0.3
2,219,533 + -0.1
2,219,671 - +0.7
2,219,778 + Dsui_2095 0.43 +0.7
2,219,782 + Dsui_2095 0.43 -0.8
2,219,946 + +0.7
2,220,064 - +0.7
2,220,161 + -0.8
2,220,211 + -2.6
2,220,316 - +0.7
2,220,431 - -0.8
2,220,451 - -0.3
2,220,484 + -1.6
2,220,676 - Dsui_2096 0.13 +0.7
2,220,712 + Dsui_2096 0.16 +0.7
2,220,734 + Dsui_2096 0.17 +0.7
2,220,741 + +0.7
2,220,772 + Dsui_2096 0.19 -2.7
2,220,869 + Dsui_2096 0.25 -1.6
2,220,931 - Dsui_2096 0.29 -2.4
2,220,987 + Dsui_2096 0.33 -1.3
2,221,080 + Dsui_2096 0.39 +0.7
2,221,133 + Dsui_2096 0.42 -0.8
2,221,165 + Dsui_2096 0.44 +0.7

Or see this region's nucleotide sequence