Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1978 and Dsui_1979 are separated by 12 nucleotides Dsui_1979 and Dsui_1980 are separated by 491 nucleotides
Dsui_1978: Dsui_1978 - putative lipoprotein, at 2,086,870 to 2,088,003
_1978
Dsui_1979: Dsui_1979 - metal-dependent hydrolase, beta-lactamase superfamily I, at 2,088,016 to 2,088,783
_1979
Dsui_1980: Dsui_1980 - hypothetical protein, at 2,089,275 to 2,089,748
_1980
Position (kb)
2088
2089 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2087.754 kb on + strand, within Dsui_1978 at 2087.754 kb on + strand, within Dsui_1978 at 2087.907 kb on + strand at 2088.182 kb on - strand, within Dsui_1979 at 2088.204 kb on - strand, within Dsui_1979 at 2088.308 kb on - strand, within Dsui_1979 at 2088.324 kb on + strand, within Dsui_1979 at 2088.324 kb on + strand, within Dsui_1979 at 2088.332 kb on - strand, within Dsui_1979 at 2088.332 kb on - strand, within Dsui_1979 at 2088.455 kb on + strand, within Dsui_1979 at 2088.482 kb on + strand, within Dsui_1979 at 2088.490 kb on - strand, within Dsui_1979 at 2088.550 kb on + strand, within Dsui_1979 at 2088.626 kb on + strand, within Dsui_1979 at 2088.685 kb on - strand, within Dsui_1979 at 2088.685 kb on - strand, within Dsui_1979 at 2088.709 kb on + strand at 2088.717 kb on - strand at 2088.727 kb on + strand at 2088.790 kb on - strand at 2089.161 kb on - strand at 2089.179 kb on + strand at 2089.234 kb on - strand at 2089.234 kb on - strand at 2089.289 kb on + strand at 2089.311 kb on - strand at 2089.350 kb on - strand, within Dsui_1980 at 2089.350 kb on - strand, within Dsui_1980 at 2089.410 kb on + strand, within Dsui_1980 at 2089.471 kb on - strand, within Dsui_1980 at 2089.482 kb on - strand, within Dsui_1980 at 2089.549 kb on - strand at 2089.569 kb on + strand at 2089.570 kb on - strand, within Dsui_1980 at 2089.610 kb on + strand, within Dsui_1980 at 2089.627 kb on - strand, within Dsui_1980 at 2089.639 kb on + strand, within Dsui_1980 at 2089.662 kb on - strand, within Dsui_1980 at 2089.674 kb on - strand, within Dsui_1980 at 2089.698 kb on + strand, within Dsui_1980 at 2089.752 kb on - strand at 2089.763 kb on - strand at 2089.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 2,087,754 + Dsui_1978 0.78 -2.3 2,087,754 + Dsui_1978 0.78 +1.5 2,087,907 + -3.1 2,088,182 - Dsui_1979 0.22 -1.4 2,088,204 - Dsui_1979 0.24 -0.1 2,088,308 - Dsui_1979 0.38 -0.1 2,088,324 + Dsui_1979 0.40 +0.7 2,088,324 + Dsui_1979 0.40 +0.7 2,088,332 - Dsui_1979 0.41 -1.1 2,088,332 - Dsui_1979 0.41 -0.7 2,088,455 + Dsui_1979 0.57 +0.5 2,088,482 + Dsui_1979 0.61 +0.6 2,088,490 - Dsui_1979 0.62 -0.7 2,088,550 + Dsui_1979 0.70 +0.2 2,088,626 + Dsui_1979 0.79 +1.0 2,088,685 - Dsui_1979 0.87 +0.4 2,088,685 - Dsui_1979 0.87 +1.3 2,088,709 + -0.3 2,088,717 - +1.5 2,088,727 + +0.4 2,088,790 - +0.9 2,089,161 - -0.6 2,089,179 + +0.9 2,089,234 - -1.1 2,089,234 - -0.1 2,089,289 + -0.7 2,089,311 - -0.7 2,089,350 - Dsui_1980 0.16 +0.9 2,089,350 - Dsui_1980 0.16 -1.1 2,089,410 + Dsui_1980 0.28 +0.9 2,089,471 - Dsui_1980 0.41 +0.9 2,089,482 - Dsui_1980 0.44 -2.7 2,089,549 - +0.9 2,089,569 + +0.9 2,089,570 - Dsui_1980 0.62 +0.9 2,089,610 + Dsui_1980 0.71 -0.1 2,089,627 - Dsui_1980 0.74 -0.7 2,089,639 + Dsui_1980 0.77 -1.1 2,089,662 - Dsui_1980 0.82 +0.9 2,089,674 - Dsui_1980 0.84 -0.1 2,089,698 + Dsui_1980 0.89 -2.5 2,089,752 - -0.1 2,089,763 - +0.9 2,089,773 - -1.7
Or see this region's nucleotide sequence