Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1932 and Dsui_1933 are separated by 487 nucleotides Dsui_1933 and Dsui_1934 overlap by 8 nucleotides Dsui_1934 and Dsui_1935 are separated by 79 nucleotides
Dsui_1932: Dsui_1932 - transcriptional regulator, at 2,041,988 to 2,042,491
_1932
Dsui_1933: Dsui_1933 - 2-phosphoglycolate phosphatase, at 2,042,979 to 2,043,638
_1933
Dsui_1934: Dsui_1934 - ubiquinone biosynthesis O-methyltransferase, at 2,043,631 to 2,044,329
_1934
Dsui_1935: Dsui_1935 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 2,044,409 to 2,045,047
_1935
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-2
-1
0
1 at 2042.187 kb on - strand, within Dsui_1932 at 2042.214 kb on + strand, within Dsui_1932 at 2042.214 kb on + strand, within Dsui_1932 at 2042.406 kb on - strand, within Dsui_1932 at 2042.406 kb on - strand, within Dsui_1932 at 2042.406 kb on - strand, within Dsui_1932 at 2042.502 kb on - strand at 2042.512 kb on - strand at 2042.545 kb on - strand at 2042.570 kb on + strand at 2042.570 kb on + strand at 2042.578 kb on - strand at 2042.893 kb on - strand at 2042.895 kb on + strand at 2042.928 kb on - strand at 2042.935 kb on - strand at 2042.947 kb on + strand at 2043.048 kb on - strand, within Dsui_1933 at 2043.061 kb on + strand, within Dsui_1933 at 2043.103 kb on + strand at 2043.146 kb on + strand at 2043.146 kb on + strand, within Dsui_1933 at 2043.174 kb on - strand, within Dsui_1933 at 2043.256 kb on + strand, within Dsui_1933 at 2043.380 kb on + strand, within Dsui_1933 at 2043.388 kb on - strand, within Dsui_1933 at 2043.406 kb on + strand, within Dsui_1933 at 2043.419 kb on - strand, within Dsui_1933 at 2043.444 kb on + strand, within Dsui_1933 at 2043.504 kb on + strand, within Dsui_1933 at 2043.505 kb on + strand, within Dsui_1933 at 2043.520 kb on - strand, within Dsui_1933 at 2043.522 kb on + strand, within Dsui_1933 at 2043.530 kb on - strand, within Dsui_1933 at 2043.572 kb on - strand, within Dsui_1933 at 2043.574 kb on + strand at 2043.618 kb on + strand at 2043.647 kb on + strand at 2043.647 kb on + strand at 2044.348 kb on - strand at 2044.355 kb on - strand at 2044.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 2,042,187 - Dsui_1932 0.39 +0.9 2,042,214 + Dsui_1932 0.45 -0.1 2,042,214 + Dsui_1932 0.45 +0.2 2,042,406 - Dsui_1932 0.83 -2.3 2,042,406 - Dsui_1932 0.83 -0.7 2,042,406 - Dsui_1932 0.83 +0.9 2,042,502 - +1.1 2,042,512 - +1.0 2,042,545 - +0.7 2,042,570 + +0.9 2,042,570 + -0.1 2,042,578 - +0.5 2,042,893 - +0.0 2,042,895 + -0.7 2,042,928 - -1.5 2,042,935 - -0.5 2,042,947 + -0.1 2,043,048 - Dsui_1933 0.10 +0.7 2,043,061 + Dsui_1933 0.12 -0.1 2,043,103 + +0.9 2,043,146 + +0.9 2,043,146 + Dsui_1933 0.25 -1.9 2,043,174 - Dsui_1933 0.30 -0.1 2,043,256 + Dsui_1933 0.42 +0.9 2,043,380 + Dsui_1933 0.61 -0.7 2,043,388 - Dsui_1933 0.62 +1.4 2,043,406 + Dsui_1933 0.65 -0.1 2,043,419 - Dsui_1933 0.67 +0.4 2,043,444 + Dsui_1933 0.70 -1.7 2,043,504 + Dsui_1933 0.80 -1.9 2,043,505 + Dsui_1933 0.80 -0.1 2,043,520 - Dsui_1933 0.82 +0.4 2,043,522 + Dsui_1933 0.82 -0.7 2,043,530 - Dsui_1933 0.83 -0.5 2,043,572 - Dsui_1933 0.90 +0.4 2,043,574 + -0.1 2,043,618 + +0.9 2,043,647 + +1.5 2,043,647 + -2.5 2,044,348 - +0.0 2,044,355 - +0.1 2,044,370 - +0.2
Or see this region's nucleotide sequence