Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1849 and Dsui_1850 are separated by 3 nucleotides Dsui_1850 and Dsui_1851 are separated by 319 nucleotides Dsui_1851 and Dsui_1852 are separated by 3 nucleotides Dsui_1852 and Dsui_1853 are separated by 215 nucleotides
Dsui_1849: Dsui_1849 - protein-tyrosine-phosphatase, at 1,944,227 to 1,944,706
_1849
Dsui_1850: Dsui_1850 - putative transcriptional regulator, at 1,944,710 to 1,945,093
_1850
Dsui_1851: Dsui_1851 - signal transduction histidine kinase, at 1,945,413 to 1,946,837
_1851
Dsui_1852: Dsui_1852 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,946,841 to 1,947,530
_1852
Dsui_1853: Dsui_1853 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 1,947,746 to 1,948,312
_1853
Position (kb)
1945
1946
1947 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1944.648 kb on - strand, within Dsui_1849 at 1944.716 kb on - strand at 1944.793 kb on - strand, within Dsui_1850 at 1944.902 kb on - strand, within Dsui_1850 at 1944.925 kb on - strand, within Dsui_1850 at 1944.941 kb on + strand, within Dsui_1850 at 1944.945 kb on - strand, within Dsui_1850 at 1944.964 kb on + strand at 1944.964 kb on + strand, within Dsui_1850 at 1944.972 kb on - strand, within Dsui_1850 at 1945.291 kb on - strand at 1945.529 kb on + strand at 1945.633 kb on + strand at 1945.640 kb on + strand at 1945.648 kb on - strand at 1945.745 kb on + strand at 1945.802 kb on + strand at 1945.922 kb on - strand, within Dsui_1851 at 1945.955 kb on + strand at 1946.037 kb on + strand at 1946.077 kb on + strand at 1946.095 kb on - strand, within Dsui_1851 at 1946.267 kb on - strand, within Dsui_1851 at 1946.316 kb on + strand at 1946.317 kb on + strand, within Dsui_1851 at 1946.340 kb on - strand, within Dsui_1851 at 1946.527 kb on + strand, within Dsui_1851 at 1946.575 kb on + strand, within Dsui_1851 at 1946.839 kb on + strand at 1946.917 kb on - strand at 1946.996 kb on + strand at 1947.005 kb on + strand, within Dsui_1852 at 1947.030 kb on + strand, within Dsui_1852 at 1947.188 kb on - strand, within Dsui_1852 at 1947.262 kb on - strand, within Dsui_1852 at 1947.561 kb on + strand at 1947.617 kb on + strand at 1947.617 kb on + strand at 1947.617 kb on + strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.644 kb on - strand at 1947.697 kb on + strand at 1947.783 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,944,648 - Dsui_1849 0.88 -1.8 1,944,716 - +0.5 1,944,793 - Dsui_1850 0.22 +0.2 1,944,902 - Dsui_1850 0.50 +0.1 1,944,925 - Dsui_1850 0.56 +0.0 1,944,941 + Dsui_1850 0.60 -1.8 1,944,945 - Dsui_1850 0.61 +0.2 1,944,964 + +0.5 1,944,964 + Dsui_1850 0.66 -1.5 1,944,972 - Dsui_1850 0.68 +0.2 1,945,291 - -1.5 1,945,529 + +0.5 1,945,633 + +0.5 1,945,640 + -0.5 1,945,648 - +0.5 1,945,745 + -1.5 1,945,802 + -0.5 1,945,922 - Dsui_1851 0.36 -2.3 1,945,955 + +0.5 1,946,037 + -1.1 1,946,077 + -1.5 1,946,095 - Dsui_1851 0.48 +0.5 1,946,267 - Dsui_1851 0.60 -1.5 1,946,316 + +0.5 1,946,317 + Dsui_1851 0.63 -1.1 1,946,340 - Dsui_1851 0.65 +0.5 1,946,527 + Dsui_1851 0.78 -1.1 1,946,575 + Dsui_1851 0.82 -1.5 1,946,839 + -0.5 1,946,917 - +0.5 1,946,996 + -0.5 1,947,005 + Dsui_1852 0.24 -3.6 1,947,030 + Dsui_1852 0.27 -2.3 1,947,188 - Dsui_1852 0.50 -0.5 1,947,262 - Dsui_1852 0.61 -1.1 1,947,561 + -0.5 1,947,617 + -0.5 1,947,617 + +0.5 1,947,617 + +0.5 1,947,625 - -0.5 1,947,625 - -0.5 1,947,625 - -1.1 1,947,625 - +0.5 1,947,644 - +0.5 1,947,697 + +0.5 1,947,783 + -2.1
Or see this region's nucleotide sequence