Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1848 and Dsui_1849 are separated by 51 nucleotides Dsui_1849 and Dsui_1850 are separated by 3 nucleotides Dsui_1850 and Dsui_1851 are separated by 319 nucleotides
Dsui_1848: Dsui_1848 - arsenical-resistance protein, at 1,943,120 to 1,944,175
_1848
Dsui_1849: Dsui_1849 - protein-tyrosine-phosphatase, at 1,944,227 to 1,944,706
_1849
Dsui_1850: Dsui_1850 - putative transcriptional regulator, at 1,944,710 to 1,945,093
_1850
Dsui_1851: Dsui_1851 - signal transduction histidine kinase, at 1,945,413 to 1,946,837
_1851
Position (kb)
1944
1945 Strain fitness (log2 ratio)
-2
-1
0
1 at 1943.299 kb on - strand, within Dsui_1848 at 1943.463 kb on - strand at 1943.608 kb on + strand at 1943.621 kb on - strand at 1943.690 kb on - strand at 1943.695 kb on - strand at 1943.820 kb on + strand at 1943.835 kb on - strand at 1943.974 kb on + strand, within Dsui_1848 at 1943.982 kb on - strand, within Dsui_1848 at 1943.982 kb on - strand, within Dsui_1848 at 1944.109 kb on + strand at 1944.145 kb on - strand at 1944.203 kb on - strand at 1944.225 kb on + strand at 1944.238 kb on - strand at 1944.239 kb on - strand at 1944.261 kb on + strand at 1944.261 kb on + strand at 1944.269 kb on - strand at 1944.648 kb on - strand, within Dsui_1849 at 1944.716 kb on - strand at 1944.793 kb on - strand, within Dsui_1850 at 1944.902 kb on - strand, within Dsui_1850 at 1944.925 kb on - strand, within Dsui_1850 at 1944.941 kb on + strand, within Dsui_1850 at 1944.945 kb on - strand, within Dsui_1850 at 1944.964 kb on + strand at 1944.964 kb on + strand, within Dsui_1850 at 1944.972 kb on - strand, within Dsui_1850 at 1945.291 kb on - strand at 1945.529 kb on + strand at 1945.633 kb on + strand at 1945.640 kb on + strand at 1945.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,943,299 - Dsui_1848 0.17 -1.1 1,943,463 - -1.1 1,943,608 + +0.5 1,943,621 - +0.5 1,943,690 - -0.5 1,943,695 - +0.5 1,943,820 + +0.5 1,943,835 - -0.5 1,943,974 + Dsui_1848 0.81 -0.5 1,943,982 - Dsui_1848 0.82 -1.5 1,943,982 - Dsui_1848 0.82 -0.5 1,944,109 + -0.5 1,944,145 - -0.5 1,944,203 - -1.1 1,944,225 + +0.5 1,944,238 - -1.1 1,944,239 - +0.5 1,944,261 + +0.5 1,944,261 + +0.5 1,944,269 - +0.5 1,944,648 - Dsui_1849 0.88 -1.8 1,944,716 - +0.5 1,944,793 - Dsui_1850 0.22 +0.2 1,944,902 - Dsui_1850 0.50 +0.1 1,944,925 - Dsui_1850 0.56 +0.0 1,944,941 + Dsui_1850 0.60 -1.8 1,944,945 - Dsui_1850 0.61 +0.2 1,944,964 + +0.5 1,944,964 + Dsui_1850 0.66 -1.5 1,944,972 - Dsui_1850 0.68 +0.2 1,945,291 - -1.5 1,945,529 + +0.5 1,945,633 + +0.5 1,945,640 + -0.5 1,945,648 - +0.5
Or see this region's nucleotide sequence