Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1696 and Dsui_1697 are separated by 174 nucleotides Dsui_1697 and Dsui_1698 are separated by 120 nucleotides Dsui_1698 and Dsui_1699 are separated by 101 nucleotides Dsui_1699 and Dsui_1700 are separated by 12 nucleotides
Dsui_1696: Dsui_1696 - seryl-tRNA synthetase, at 1,784,106 to 1,785,389
_1696
Dsui_1697: Dsui_1697 - putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 1,785,564 to 1,787,000
_1697
Dsui_1698: Dsui_1698 - tRNA-Ser, at 1,787,121 to 1,787,213
_1698
Dsui_1699: Dsui_1699 - cation/cationic drug transporter, at 1,787,315 to 1,787,671
_1699
Dsui_1700: Dsui_1700 - putative membrane protein, at 1,787,684 to 1,788,394
_1700
Position (kb)
1785
1786
1787
1788 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1785.364 kb on + strand at 1785.386 kb on - strand at 1785.465 kb on - strand at 1785.837 kb on - strand, within Dsui_1697 at 1785.869 kb on - strand, within Dsui_1697 at 1785.984 kb on + strand, within Dsui_1697 at 1786.014 kb on + strand, within Dsui_1697 at 1786.113 kb on + strand, within Dsui_1697 at 1786.113 kb on + strand at 1786.121 kb on - strand, within Dsui_1697 at 1786.162 kb on - strand, within Dsui_1697 at 1786.365 kb on - strand, within Dsui_1697 at 1786.459 kb on - strand, within Dsui_1697 at 1786.579 kb on - strand, within Dsui_1697 at 1786.587 kb on - strand, within Dsui_1697 at 1786.946 kb on - strand at 1786.946 kb on - strand at 1786.947 kb on - strand at 1786.978 kb on - strand at 1786.996 kb on - strand at 1787.080 kb on - strand at 1787.280 kb on + strand at 1787.356 kb on + strand, within Dsui_1699 at 1787.364 kb on - strand at 1787.374 kb on - strand, within Dsui_1699 at 1787.384 kb on + strand, within Dsui_1699 at 1787.386 kb on + strand, within Dsui_1699 at 1787.397 kb on + strand, within Dsui_1699 at 1787.449 kb on - strand, within Dsui_1699 at 1787.522 kb on + strand, within Dsui_1699 at 1787.522 kb on + strand, within Dsui_1699 at 1787.530 kb on - strand, within Dsui_1699 at 1787.530 kb on - strand, within Dsui_1699 at 1787.530 kb on - strand, within Dsui_1699 at 1787.535 kb on - strand, within Dsui_1699 at 1787.554 kb on - strand, within Dsui_1699 at 1787.622 kb on + strand, within Dsui_1699 at 1787.636 kb on - strand at 1787.652 kb on + strand at 1787.775 kb on + strand, within Dsui_1700 at 1787.793 kb on + strand, within Dsui_1700 at 1787.799 kb on + strand, within Dsui_1700
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,785,364 + -0.1 1,785,386 - -1.8 1,785,465 - -1.0 1,785,837 - Dsui_1697 0.19 -0.4 1,785,869 - Dsui_1697 0.21 -0.1 1,785,984 + Dsui_1697 0.29 +0.2 1,786,014 + Dsui_1697 0.31 +0.2 1,786,113 + Dsui_1697 0.38 -0.8 1,786,113 + +0.2 1,786,121 - Dsui_1697 0.39 +1.1 1,786,162 - Dsui_1697 0.42 -1.2 1,786,365 - Dsui_1697 0.56 -2.8 1,786,459 - Dsui_1697 0.62 -0.8 1,786,579 - Dsui_1697 0.71 -0.1 1,786,587 - Dsui_1697 0.71 -0.1 1,786,946 - +0.0 1,786,946 - -0.3 1,786,947 - -0.0 1,786,978 - -0.1 1,786,996 - +0.2 1,787,080 - -0.8 1,787,280 + +0.0 1,787,356 + Dsui_1699 0.11 -0.0 1,787,364 - +0.2 1,787,374 - Dsui_1699 0.17 -1.8 1,787,384 + Dsui_1699 0.19 -0.3 1,787,386 + Dsui_1699 0.20 +0.1 1,787,397 + Dsui_1699 0.23 -0.4 1,787,449 - Dsui_1699 0.38 -1.3 1,787,522 + Dsui_1699 0.58 -0.8 1,787,522 + Dsui_1699 0.58 -0.8 1,787,530 - Dsui_1699 0.60 +0.1 1,787,530 - Dsui_1699 0.60 -2.1 1,787,530 - Dsui_1699 0.60 +0.2 1,787,535 - Dsui_1699 0.62 -0.8 1,787,554 - Dsui_1699 0.67 -0.8 1,787,622 + Dsui_1699 0.86 -0.8 1,787,636 - +0.6 1,787,652 + +1.6 1,787,775 + Dsui_1700 0.13 -0.8 1,787,793 + Dsui_1700 0.15 +0.2 1,787,799 + Dsui_1700 0.16 -0.8
Or see this region's nucleotide sequence