Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1668 and Dsui_1669 are separated by 102 nucleotides Dsui_1669 and Dsui_1670 are separated by 28 nucleotides
Dsui_1668: Dsui_1668 - alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase, at 1,752,845 to 1,753,969
_1668
Dsui_1669: Dsui_1669 - trypsin-like serine protease with C-terminal PDZ domain, at 1,754,072 to 1,755,490
_1669
Dsui_1670: Dsui_1670 - cytochrome c peroxidase, at 1,755,519 to 1,756,628
_1670
Position (kb)
1754
1755
1756 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1753.143 kb on - strand, within Dsui_1668 at 1753.309 kb on - strand at 1753.762 kb on - strand, within Dsui_1668 at 1753.874 kb on - strand at 1754.117 kb on - strand at 1754.232 kb on - strand at 1754.345 kb on - strand at 1754.365 kb on + strand at 1754.391 kb on - strand, within Dsui_1669 at 1754.718 kb on + strand at 1754.872 kb on - strand, within Dsui_1669 at 1754.969 kb on + strand, within Dsui_1669 at 1755.166 kb on + strand at 1755.171 kb on - strand, within Dsui_1669 at 1755.184 kb on - strand at 1755.370 kb on + strand at 1755.462 kb on - strand at 1755.515 kb on - strand at 1755.562 kb on - strand at 1755.676 kb on + strand at 1755.684 kb on - strand, within Dsui_1670 at 1755.717 kb on + strand, within Dsui_1670 at 1755.782 kb on + strand at 1755.835 kb on - strand, within Dsui_1670 at 1755.913 kb on - strand at 1756.039 kb on - strand, within Dsui_1670 at 1756.057 kb on + strand at 1756.214 kb on - strand at 1756.351 kb on - strand, within Dsui_1670 at 1756.351 kb on - strand, within Dsui_1670 at 1756.443 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,753,143 - Dsui_1668 0.26 +0.2 1,753,309 - +0.2 1,753,762 - Dsui_1668 0.82 -2.1 1,753,874 - -0.8 1,754,117 - -1.8 1,754,232 - +0.2 1,754,345 - -0.8 1,754,365 + +0.2 1,754,391 - Dsui_1669 0.22 -0.8 1,754,718 + +0.2 1,754,872 - Dsui_1669 0.56 -2.6 1,754,969 + Dsui_1669 0.63 -1.3 1,755,166 + +0.2 1,755,171 - Dsui_1669 0.77 -1.8 1,755,184 - +0.2 1,755,370 + +0.2 1,755,462 - -2.3 1,755,515 - +0.2 1,755,562 - -0.2 1,755,676 + +0.2 1,755,684 - Dsui_1670 0.15 -0.8 1,755,717 + Dsui_1670 0.18 -1.3 1,755,782 + -1.3 1,755,835 - Dsui_1670 0.28 -2.8 1,755,913 - -1.3 1,756,039 - Dsui_1670 0.47 -0.8 1,756,057 + -0.8 1,756,214 - -0.8 1,756,351 - Dsui_1670 0.75 -1.3 1,756,351 - Dsui_1670 0.75 -0.8 1,756,443 + -0.8
Or see this region's nucleotide sequence