Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1565 and Dsui_1566 are separated by 20 nucleotides Dsui_1566 and Dsui_1567 are separated by 14 nucleotides Dsui_1567 and Dsui_1568 are separated by 121 nucleotides Dsui_1568 and Dsui_1569 are separated by 3 nucleotides
Dsui_1565: Dsui_1565 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,636,695 to 1,639,238
_1565
Dsui_1566: Dsui_1566 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 1,639,259 to 1,640,071
_1566
Dsui_1567: Dsui_1567 - Peroxiredoxin, at 1,640,086 to 1,640,646
_1567
Dsui_1568: Dsui_1568 - RNA methyltransferase, RsmE family, at 1,640,768 to 1,641,517
_1568
Dsui_1569: Dsui_1569 - polyphosphate:AMP phosphotransferase, at 1,641,521 to 1,643,029
_1569
Position (kb)
1640
1641 Strain fitness (log2 ratio)
-2
-1
0
1 at 1639.173 kb on + strand at 1639.181 kb on - strand at 1639.193 kb on - strand at 1639.239 kb on + strand at 1639.339 kb on + strand at 1639.363 kb on + strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.379 kb on - strand at 1639.524 kb on + strand, within Dsui_1566 at 1639.716 kb on - strand, within Dsui_1566 at 1639.830 kb on - strand, within Dsui_1566 at 1639.867 kb on + strand at 1639.898 kb on + strand, within Dsui_1566 at 1639.927 kb on - strand, within Dsui_1566 at 1639.953 kb on + strand at 1639.961 kb on - strand at 1640.012 kb on + strand at 1640.164 kb on + strand, within Dsui_1567 at 1640.172 kb on - strand, within Dsui_1567 at 1640.247 kb on - strand, within Dsui_1567 at 1640.302 kb on - strand, within Dsui_1567 at 1640.307 kb on - strand at 1640.454 kb on + strand at 1640.462 kb on - strand, within Dsui_1567 at 1640.462 kb on - strand, within Dsui_1567 at 1640.462 kb on - strand, within Dsui_1567 at 1640.464 kb on + strand at 1640.467 kb on - strand, within Dsui_1567 at 1640.478 kb on + strand at 1640.489 kb on + strand at 1640.497 kb on - strand, within Dsui_1567 at 1640.676 kb on - strand at 1640.676 kb on - strand at 1640.676 kb on - strand at 1640.826 kb on + strand at 1640.826 kb on + strand at 1640.834 kb on - strand at 1640.834 kb on - strand at 1640.943 kb on - strand at 1640.956 kb on - strand, within Dsui_1568 at 1641.030 kb on - strand, within Dsui_1568 at 1641.240 kb on - strand, within Dsui_1568 at 1641.613 kb on + strand at 1641.628 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,639,173 + -0.8 1,639,181 - +0.2 1,639,193 - +0.2 1,639,239 + -2.2 1,639,339 + -0.8 1,639,363 + Dsui_1566 0.13 +0.2 1,639,371 - Dsui_1566 0.14 +1.2 1,639,371 - Dsui_1566 0.14 -2.1 1,639,371 - Dsui_1566 0.14 -1.0 1,639,371 - Dsui_1566 0.14 -0.4 1,639,379 - -0.8 1,639,524 + Dsui_1566 0.33 -0.8 1,639,716 - Dsui_1566 0.56 -0.4 1,639,830 - Dsui_1566 0.70 +0.5 1,639,867 + +0.2 1,639,898 + Dsui_1566 0.79 -1.8 1,639,927 - Dsui_1566 0.82 -0.6 1,639,953 + +0.2 1,639,961 - -0.8 1,640,012 + -1.8 1,640,164 + Dsui_1567 0.14 +0.2 1,640,172 - Dsui_1567 0.15 -0.5 1,640,247 - Dsui_1567 0.29 -0.4 1,640,302 - Dsui_1567 0.39 +0.2 1,640,307 - +1.2 1,640,454 + -2.1 1,640,462 - Dsui_1567 0.67 +0.9 1,640,462 - Dsui_1567 0.67 -0.4 1,640,462 - Dsui_1567 0.67 -0.2 1,640,464 + +0.2 1,640,467 - Dsui_1567 0.68 -0.6 1,640,478 + +0.2 1,640,489 + -0.8 1,640,497 - Dsui_1567 0.73 +0.2 1,640,676 - -0.6 1,640,676 - -1.0 1,640,676 - -1.4 1,640,826 + -0.2 1,640,826 + +0.0 1,640,834 - -0.8 1,640,834 - -0.8 1,640,943 - +0.2 1,640,956 - Dsui_1568 0.25 +0.2 1,641,030 - Dsui_1568 0.35 +1.2 1,641,240 - Dsui_1568 0.63 -2.1 1,641,613 + +0.4 1,641,628 + -0.9
Or see this region's nucleotide sequence