Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1562 and Dsui_1563 are separated by 20 nucleotides Dsui_1563 and Dsui_1564 are separated by 69 nucleotides
Dsui_1562: Dsui_1562 - phosphoribulokinase, at 1,630,705 to 1,631,580
_1562
Dsui_1563: Dsui_1563 - fructose-1,6-bisphosphatase, at 1,631,601 to 1,632,599
_1563
Dsui_1564: Dsui_1564 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,632,669 to 1,636,514
_1564
Position (kb)
1631
1632
1633 Strain fitness (log2 ratio)
-2
-1
0
1 at 1630.652 kb on + strand at 1630.670 kb on - strand at 1630.741 kb on + strand at 1630.810 kb on - strand, within Dsui_1562 at 1630.843 kb on - strand, within Dsui_1562 at 1630.849 kb on + strand, within Dsui_1562 at 1630.890 kb on - strand, within Dsui_1562 at 1630.931 kb on + strand at 1630.940 kb on - strand, within Dsui_1562 at 1630.942 kb on + strand, within Dsui_1562 at 1631.187 kb on + strand, within Dsui_1562 at 1631.416 kb on + strand, within Dsui_1562 at 1631.543 kb on - strand at 1632.654 kb on + strand at 1632.661 kb on + strand at 1632.662 kb on - strand at 1632.700 kb on - strand at 1632.832 kb on - strand at 1632.913 kb on + strand at 1632.923 kb on + strand at 1632.943 kb on + strand at 1632.946 kb on - strand at 1632.956 kb on - strand at 1633.191 kb on + strand, within Dsui_1564 at 1633.513 kb on + strand, within Dsui_1564 at 1633.586 kb on + strand, within Dsui_1564
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,630,652 + +0.2 1,630,670 - -0.5 1,630,741 + +0.2 1,630,810 - Dsui_1562 0.12 -1.0 1,630,843 - Dsui_1562 0.16 -1.6 1,630,849 + Dsui_1562 0.16 -0.8 1,630,890 - Dsui_1562 0.21 -0.8 1,630,931 + +0.2 1,630,940 - Dsui_1562 0.27 -0.3 1,630,942 + Dsui_1562 0.27 -1.8 1,631,187 + Dsui_1562 0.55 -0.8 1,631,416 + Dsui_1562 0.81 +0.2 1,631,543 - -0.7 1,632,654 + -2.3 1,632,661 + +0.2 1,632,662 - -0.2 1,632,700 - -0.4 1,632,832 - +0.2 1,632,913 + +0.2 1,632,923 + +0.2 1,632,943 + -1.3 1,632,946 - +0.4 1,632,956 - -0.9 1,633,191 + Dsui_1564 0.14 -0.8 1,633,513 + Dsui_1564 0.22 -0.8 1,633,586 + Dsui_1564 0.24 -0.8
Or see this region's nucleotide sequence