Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1424 and Dsui_1425 are separated by 69 nucleotides Dsui_1425 and Dsui_1426 are separated by 23 nucleotides Dsui_1426 and Dsui_1427 are separated by 20 nucleotides Dsui_1427 and Dsui_1428 are separated by 19 nucleotides
Dsui_1424: Dsui_1424 - twin arginine targeting protein translocase subunit TatC, at 1,476,467 to 1,477,342
_1424
Dsui_1425: Dsui_1425 - putative glutamine amidotransferase, at 1,477,412 to 1,478,236
_1425
Dsui_1426: Dsui_1426 - periplasmic serine protease, Do/DeqQ family, at 1,478,260 to 1,479,414
_1426
Dsui_1427: Dsui_1427 - dinuclear metal center protein, YbgI/SA1388 family, at 1,479,435 to 1,480,181
_1427
Dsui_1428: Dsui_1428 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase, at 1,480,201 to 1,480,917
_1428
Position (kb)
1478
1479
1480 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1477.307 kb on + strand at 1477.514 kb on + strand at 1477.514 kb on + strand, within Dsui_1425 at 1477.542 kb on + strand, within Dsui_1425 at 1477.626 kb on + strand, within Dsui_1425 at 1477.680 kb on - strand, within Dsui_1425 at 1477.682 kb on - strand, within Dsui_1425 at 1477.965 kb on + strand, within Dsui_1425 at 1477.998 kb on - strand, within Dsui_1425 at 1478.058 kb on + strand, within Dsui_1425 at 1478.069 kb on + strand, within Dsui_1425 at 1478.410 kb on - strand, within Dsui_1426 at 1478.420 kb on - strand, within Dsui_1426 at 1478.517 kb on + strand, within Dsui_1426 at 1478.747 kb on + strand, within Dsui_1426 at 1478.801 kb on - strand, within Dsui_1426 at 1478.846 kb on + strand at 1478.938 kb on - strand, within Dsui_1426 at 1479.096 kb on + strand, within Dsui_1426 at 1479.096 kb on + strand, within Dsui_1426 at 1479.104 kb on - strand, within Dsui_1426 at 1479.214 kb on - strand, within Dsui_1426 at 1479.215 kb on + strand, within Dsui_1426 at 1479.335 kb on + strand at 1479.344 kb on - strand at 1479.368 kb on + strand at 1479.375 kb on + strand at 1479.473 kb on + strand at 1479.575 kb on - strand at 1479.685 kb on - strand at 1479.685 kb on - strand, within Dsui_1427 at 1479.696 kb on - strand, within Dsui_1427 at 1479.696 kb on - strand at 1479.700 kb on - strand, within Dsui_1427 at 1479.710 kb on + strand, within Dsui_1427 at 1479.784 kb on - strand at 1479.965 kb on + strand, within Dsui_1427 at 1479.990 kb on - strand, within Dsui_1427 at 1480.046 kb on - strand at 1480.183 kb on - strand at 1480.234 kb on + strand at 1480.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,477,307 + +0.3 1,477,514 + +0.2 1,477,514 + Dsui_1425 0.12 -3.0 1,477,542 + Dsui_1425 0.16 -2.3 1,477,626 + Dsui_1425 0.26 -1.1 1,477,680 - Dsui_1425 0.32 -1.1 1,477,682 - Dsui_1425 0.33 -1.5 1,477,965 + Dsui_1425 0.67 -0.8 1,477,998 - Dsui_1425 0.71 -1.3 1,478,058 + Dsui_1425 0.78 -1.6 1,478,069 + Dsui_1425 0.80 +1.2 1,478,410 - Dsui_1426 0.13 -1.0 1,478,420 - Dsui_1426 0.14 -1.1 1,478,517 + Dsui_1426 0.22 -0.8 1,478,747 + Dsui_1426 0.42 -0.8 1,478,801 - Dsui_1426 0.47 -0.4 1,478,846 + +0.2 1,478,938 - Dsui_1426 0.59 -1.9 1,479,096 + Dsui_1426 0.72 -1.4 1,479,096 + Dsui_1426 0.72 -0.8 1,479,104 - Dsui_1426 0.73 -1.7 1,479,214 - Dsui_1426 0.83 -1.0 1,479,215 + Dsui_1426 0.83 -1.8 1,479,335 + -1.8 1,479,344 - -1.5 1,479,368 + -1.4 1,479,375 + +0.2 1,479,473 + +0.2 1,479,575 - +0.2 1,479,685 - -0.8 1,479,685 - Dsui_1427 0.33 -1.8 1,479,696 - Dsui_1427 0.35 -1.4 1,479,696 - +0.2 1,479,700 - Dsui_1427 0.35 -0.8 1,479,710 + Dsui_1427 0.37 +0.3 1,479,784 - +0.2 1,479,965 + Dsui_1427 0.71 +0.7 1,479,990 - Dsui_1427 0.74 -0.8 1,480,046 - +0.2 1,480,183 - +0.2 1,480,234 + -0.6 1,480,270 - -0.8
Or see this region's nucleotide sequence