Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1115 and Dsui_1116 are separated by 131 nucleotides Dsui_1116 and Dsui_1117 are separated by 78 nucleotides Dsui_1117 and Dsui_1118 are separated by 123 nucleotides
Dsui_1115: Dsui_1115 - putative acyl-CoA transferase/carnitine dehydratase, at 1,162,526 to 1,163,692
_1115
Dsui_1116: Dsui_1116 - methyl-accepting chemotaxis protein, at 1,163,824 to 1,165,431
_1116
Dsui_1117: Dsui_1117 - hemerythrin-like metal-binding domain-containing protein, at 1,165,510 to 1,165,926
_1117
Dsui_1118: Dsui_1118 - putative permease, at 1,166,050 to 1,166,946
_1118
Position (kb)
1163
1164
1165
1166 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1163.152 kb on - strand, within Dsui_1115 at 1163.365 kb on + strand, within Dsui_1115 at 1163.365 kb on + strand, within Dsui_1115 at 1163.392 kb on + strand, within Dsui_1115 at 1163.424 kb on - strand, within Dsui_1115 at 1163.427 kb on - strand, within Dsui_1115 at 1163.473 kb on - strand, within Dsui_1115 at 1163.476 kb on + strand, within Dsui_1115 at 1163.491 kb on - strand, within Dsui_1115 at 1163.540 kb on + strand, within Dsui_1115 at 1163.540 kb on + strand, within Dsui_1115 at 1163.551 kb on - strand, within Dsui_1115 at 1163.618 kb on + strand at 1163.676 kb on + strand at 1163.694 kb on - strand at 1163.711 kb on + strand at 1163.758 kb on - strand at 1163.782 kb on + strand at 1163.782 kb on + strand at 1163.840 kb on - strand at 1163.877 kb on + strand at 1163.928 kb on + strand at 1163.973 kb on + strand at 1164.016 kb on - strand, within Dsui_1116 at 1164.028 kb on - strand, within Dsui_1116 at 1164.032 kb on + strand, within Dsui_1116 at 1164.048 kb on - strand, within Dsui_1116 at 1164.093 kb on - strand, within Dsui_1116 at 1164.098 kb on - strand, within Dsui_1116 at 1164.098 kb on - strand, within Dsui_1116 at 1164.098 kb on - strand, within Dsui_1116 at 1164.171 kb on - strand, within Dsui_1116 at 1164.179 kb on + strand, within Dsui_1116 at 1164.442 kb on + strand, within Dsui_1116 at 1164.477 kb on + strand, within Dsui_1116 at 1164.546 kb on + strand, within Dsui_1116 at 1164.624 kb on + strand, within Dsui_1116 at 1164.632 kb on - strand, within Dsui_1116 at 1164.658 kb on + strand, within Dsui_1116 at 1164.785 kb on - strand, within Dsui_1116 at 1165.137 kb on + strand, within Dsui_1116 at 1165.188 kb on + strand, within Dsui_1116 at 1165.275 kb on + strand at 1165.709 kb on + strand, within Dsui_1117 at 1165.736 kb on + strand at 1165.817 kb on - strand, within Dsui_1117 at 1165.817 kb on - strand, within Dsui_1117 at 1165.969 kb on - strand at 1166.010 kb on + strand at 1166.018 kb on - strand at 1166.062 kb on + strand at 1166.183 kb on - strand, within Dsui_1118 at 1166.193 kb on - strand, within Dsui_1118 at 1166.212 kb on + strand, within Dsui_1118 at 1166.261 kb on + strand, within Dsui_1118 at 1166.278 kb on + strand, within Dsui_1118 at 1166.286 kb on - strand, within Dsui_1118 at 1166.345 kb on - strand, within Dsui_1118
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,163,152 - Dsui_1115 0.54 +0.3 1,163,365 + Dsui_1115 0.72 -1.3 1,163,365 + Dsui_1115 0.72 +0.3 1,163,392 + Dsui_1115 0.74 -0.7 1,163,424 - Dsui_1115 0.77 +0.3 1,163,427 - Dsui_1115 0.77 +0.0 1,163,473 - Dsui_1115 0.81 +0.3 1,163,476 + Dsui_1115 0.81 -3.5 1,163,491 - Dsui_1115 0.83 -2.0 1,163,540 + Dsui_1115 0.87 -0.7 1,163,540 + Dsui_1115 0.87 +0.3 1,163,551 - Dsui_1115 0.88 +0.3 1,163,618 + -2.7 1,163,676 + -0.7 1,163,694 - +0.3 1,163,711 + +0.3 1,163,758 - -1.3 1,163,782 + -0.5 1,163,782 + +0.2 1,163,840 - -1.7 1,163,877 + -0.6 1,163,928 + +0.0 1,163,973 + -0.9 1,164,016 - Dsui_1116 0.12 -1.7 1,164,028 - Dsui_1116 0.13 +0.3 1,164,032 + Dsui_1116 0.13 -0.2 1,164,048 - Dsui_1116 0.14 -1.3 1,164,093 - Dsui_1116 0.17 -1.3 1,164,098 - Dsui_1116 0.17 -0.7 1,164,098 - Dsui_1116 0.17 -0.7 1,164,098 - Dsui_1116 0.17 +0.3 1,164,171 - Dsui_1116 0.22 -0.7 1,164,179 + Dsui_1116 0.22 -0.1 1,164,442 + Dsui_1116 0.38 +0.4 1,164,477 + Dsui_1116 0.41 +0.1 1,164,546 + Dsui_1116 0.45 -0.4 1,164,624 + Dsui_1116 0.50 +0.0 1,164,632 - Dsui_1116 0.50 -2.1 1,164,658 + Dsui_1116 0.52 +0.1 1,164,785 - Dsui_1116 0.60 -0.7 1,165,137 + Dsui_1116 0.82 +0.1 1,165,188 + Dsui_1116 0.85 +0.3 1,165,275 + -1.3 1,165,709 + Dsui_1117 0.48 -1.1 1,165,736 + +0.3 1,165,817 - Dsui_1117 0.74 +0.1 1,165,817 - Dsui_1117 0.74 +0.2 1,165,969 - -0.7 1,166,010 + -0.7 1,166,018 - -1.3 1,166,062 + -0.3 1,166,183 - Dsui_1118 0.15 -1.3 1,166,193 - Dsui_1118 0.16 +0.3 1,166,212 + Dsui_1118 0.18 -0.6 1,166,261 + Dsui_1118 0.24 -0.1 1,166,278 + Dsui_1118 0.25 +0.3 1,166,286 - Dsui_1118 0.26 -0.7 1,166,345 - Dsui_1118 0.33 -2.1
Or see this region's nucleotide sequence