Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1040 and Dsui_1041 are separated by 25 nucleotides Dsui_1041 and Dsui_1042 are separated by 5 nucleotides Dsui_1042 and Dsui_1043 are separated by 87 nucleotides
Dsui_1040: Dsui_1040 - glutamyl-queuosine tRNA(Asp) synthetase, at 1,071,621 to 1,072,532
_1040
Dsui_1041: Dsui_1041 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase, at 1,072,558 to 1,073,718
_1041
Dsui_1042: Dsui_1042 - metal-dependent hydrolase, at 1,073,724 to 1,074,479
_1042
Dsui_1043: Dsui_1043 - quinolinate synthetase complex, A subunit, at 1,074,567 to 1,075,664
_1043
Position (kb)
1072
1073
1074 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1071.570 kb on + strand at 1071.804 kb on + strand, within Dsui_1040 at 1071.896 kb on - strand, within Dsui_1040 at 1071.956 kb on + strand, within Dsui_1040 at 1071.989 kb on + strand, within Dsui_1040 at 1072.035 kb on + strand, within Dsui_1040 at 1072.105 kb on + strand, within Dsui_1040 at 1072.181 kb on + strand, within Dsui_1040 at 1072.187 kb on + strand, within Dsui_1040 at 1072.269 kb on - strand, within Dsui_1040 at 1072.351 kb on + strand, within Dsui_1040 at 1072.466 kb on + strand at 1072.484 kb on + strand at 1072.491 kb on - strand at 1072.530 kb on - strand at 1072.671 kb on + strand at 1072.698 kb on + strand, within Dsui_1041 at 1072.724 kb on - strand, within Dsui_1041 at 1072.813 kb on + strand, within Dsui_1041 at 1072.868 kb on + strand, within Dsui_1041 at 1072.913 kb on + strand, within Dsui_1041 at 1072.942 kb on + strand, within Dsui_1041 at 1073.053 kb on + strand, within Dsui_1041 at 1073.280 kb on + strand, within Dsui_1041 at 1073.364 kb on - strand, within Dsui_1041 at 1073.526 kb on + strand at 1073.546 kb on + strand, within Dsui_1041 at 1073.672 kb on + strand at 1073.672 kb on + strand at 1073.720 kb on - strand at 1073.726 kb on + strand at 1073.731 kb on + strand at 1073.876 kb on - strand, within Dsui_1042 at 1073.939 kb on + strand, within Dsui_1042 at 1074.303 kb on + strand, within Dsui_1042 at 1074.329 kb on + strand, within Dsui_1042 at 1074.412 kb on - strand at 1074.454 kb on + strand at 1074.462 kb on - strand at 1074.464 kb on + strand at 1074.472 kb on - strand at 1074.497 kb on + strand at 1074.505 kb on + strand at 1074.553 kb on + strand at 1074.561 kb on - strand at 1074.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,071,570 + +0.1 1,071,804 + Dsui_1040 0.20 -0.3 1,071,896 - Dsui_1040 0.30 +0.4 1,071,956 + Dsui_1040 0.37 +0.5 1,071,989 + Dsui_1040 0.40 -0.2 1,072,035 + Dsui_1040 0.45 +0.2 1,072,105 + Dsui_1040 0.53 +0.4 1,072,181 + Dsui_1040 0.61 +2.4 1,072,187 + Dsui_1040 0.62 -0.0 1,072,269 - Dsui_1040 0.71 -1.6 1,072,351 + Dsui_1040 0.80 +0.0 1,072,466 + +0.3 1,072,484 + +0.2 1,072,491 - -1.5 1,072,530 - -0.2 1,072,671 + +2.0 1,072,698 + Dsui_1041 0.12 -0.6 1,072,724 - Dsui_1041 0.14 -0.9 1,072,813 + Dsui_1041 0.22 -1.2 1,072,868 + Dsui_1041 0.27 -1.2 1,072,913 + Dsui_1041 0.31 -1.9 1,072,942 + Dsui_1041 0.33 -0.3 1,073,053 + Dsui_1041 0.43 +0.4 1,073,280 + Dsui_1041 0.62 -0.6 1,073,364 - Dsui_1041 0.69 -0.1 1,073,526 + +0.4 1,073,546 + Dsui_1041 0.85 -1.6 1,073,672 + -0.6 1,073,672 + +0.4 1,073,720 - +0.7 1,073,726 + +0.4 1,073,731 + +1.0 1,073,876 - Dsui_1042 0.20 +0.4 1,073,939 + Dsui_1042 0.28 -0.6 1,074,303 + Dsui_1042 0.77 -0.6 1,074,329 + Dsui_1042 0.80 -1.2 1,074,412 - -0.2 1,074,454 + -2.6 1,074,462 - -0.1 1,074,464 + -0.6 1,074,472 - +0.3 1,074,497 + -0.6 1,074,505 + -2.9 1,074,553 + -1.3 1,074,561 - +0.0 1,074,563 - +0.2
Or see this region's nucleotide sequence