Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0992 and Dsui_0993 overlap by 8 nucleotides Dsui_0993 and Dsui_0994 overlap by 1 nucleotides Dsui_0994 and Dsui_0995 are separated by 18 nucleotides
Dsui_0992: Dsui_0992 - putative membrane protein, at 1,019,131 to 1,019,706
_0992
Dsui_0993: Dsui_0993 - polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase, at 1,019,699 to 1,020,316
_0993
Dsui_0994: Dsui_0994 - peptidase S16, lon domain protein, at 1,020,316 to 1,020,957
_0994
Dsui_0995: Dsui_0995 - arabinose efflux permease family protein, at 1,020,976 to 1,022,196
_0995
Position (kb)
1020
1021 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1019.433 kb on + strand, within Dsui_0992 at 1019.488 kb on - strand at 1019.701 kb on + strand at 1019.709 kb on - strand at 1019.709 kb on - strand at 1019.709 kb on - strand at 1019.709 kb on - strand at 1020.458 kb on - strand, within Dsui_0994 at 1020.463 kb on - strand at 1020.500 kb on - strand, within Dsui_0994 at 1020.514 kb on + strand, within Dsui_0994 at 1020.730 kb on + strand, within Dsui_0994 at 1020.747 kb on - strand, within Dsui_0994 at 1020.951 kb on + strand at 1020.976 kb on - strand at 1021.067 kb on - strand at 1021.244 kb on - strand, within Dsui_0995 at 1021.389 kb on + strand, within Dsui_0995 at 1021.476 kb on - strand, within Dsui_0995 at 1021.640 kb on + strand, within Dsui_0995 at 1021.648 kb on - strand, within Dsui_0995 at 1021.648 kb on - strand at 1021.696 kb on - strand at 1021.811 kb on - strand, within Dsui_0995
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,019,433 + Dsui_0992 0.52 +0.3 1,019,488 - +0.5 1,019,701 + +0.7 1,019,709 - -0.5 1,019,709 - -0.5 1,019,709 - -0.5 1,019,709 - -1.8 1,020,458 - Dsui_0994 0.22 +1.5 1,020,463 - +0.5 1,020,500 - Dsui_0994 0.29 +0.7 1,020,514 + Dsui_0994 0.31 +0.3 1,020,730 + Dsui_0994 0.64 +0.1 1,020,747 - Dsui_0994 0.67 -0.1 1,020,951 + +0.4 1,020,976 - +2.0 1,021,067 - -0.5 1,021,244 - Dsui_0995 0.22 -1.3 1,021,389 + Dsui_0995 0.34 +0.1 1,021,476 - Dsui_0995 0.41 -0.4 1,021,640 + Dsui_0995 0.54 -0.5 1,021,648 - Dsui_0995 0.55 -0.1 1,021,648 - -0.5 1,021,696 - -0.1 1,021,811 - Dsui_0995 0.68 +1.0
Or see this region's nucleotide sequence