Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0978 and Dsui_0979 are separated by 116 nucleotides Dsui_0979 and Dsui_0980 are separated by 132 nucleotides Dsui_0980 and Dsui_0981 are separated by 20 nucleotides Dsui_0981 and Dsui_0982 are separated by 63 nucleotides
Dsui_0978: Dsui_0978 - 2-hydroxychromene-2-carboxylate isomerase, at 1,004,864 to 1,005,466
_0978
Dsui_0979: Dsui_0979 - TIGR00730 family protein, at 1,005,583 to 1,006,167
_0979
Dsui_0980: Dsui_0980 - acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 1,006,300 to 1,007,907
_0980
Dsui_0981: Dsui_0981 - enoyl-CoA hydratase/carnithine racemase, at 1,007,928 to 1,008,719
_0981
Dsui_0982: Dsui_0982 - acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,008,783 to 1,010,786
_0982
Position (kb)
1006
1007
1008 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1005.414 kb on - strand at 1005.540 kb on + strand at 1005.670 kb on + strand, within Dsui_0979 at 1005.848 kb on + strand, within Dsui_0979 at 1005.939 kb on - strand, within Dsui_0979 at 1006.064 kb on + strand, within Dsui_0979 at 1006.068 kb on + strand, within Dsui_0979 at 1006.106 kb on - strand, within Dsui_0979 at 1006.416 kb on - strand at 1006.488 kb on + strand, within Dsui_0980 at 1006.613 kb on - strand, within Dsui_0980 at 1006.646 kb on - strand, within Dsui_0980 at 1006.653 kb on + strand, within Dsui_0980 at 1006.715 kb on + strand, within Dsui_0980 at 1006.721 kb on + strand, within Dsui_0980 at 1006.723 kb on - strand at 1006.799 kb on + strand, within Dsui_0980 at 1006.799 kb on + strand, within Dsui_0980 at 1006.822 kb on + strand, within Dsui_0980 at 1006.830 kb on - strand at 1006.900 kb on - strand, within Dsui_0980 at 1007.432 kb on + strand, within Dsui_0980 at 1007.530 kb on - strand, within Dsui_0980 at 1007.654 kb on - strand, within Dsui_0980 at 1007.751 kb on + strand at 1007.790 kb on + strand at 1008.053 kb on + strand, within Dsui_0981 at 1008.084 kb on - strand, within Dsui_0981 at 1008.613 kb on + strand, within Dsui_0981 at 1008.637 kb on - strand, within Dsui_0981
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 1,005,414 - -3.0 1,005,540 + -1.1 1,005,670 + Dsui_0979 0.15 +0.2 1,005,848 + Dsui_0979 0.45 +0.6 1,005,939 - Dsui_0979 0.61 +0.4 1,006,064 + Dsui_0979 0.82 -0.3 1,006,068 + Dsui_0979 0.83 +0.4 1,006,106 - Dsui_0979 0.89 +0.4 1,006,416 - -0.6 1,006,488 + Dsui_0980 0.12 -0.2 1,006,613 - Dsui_0980 0.19 +0.4 1,006,646 - Dsui_0980 0.22 -0.6 1,006,653 + Dsui_0980 0.22 +0.4 1,006,715 + Dsui_0980 0.26 -2.7 1,006,721 + Dsui_0980 0.26 -1.1 1,006,723 - -1.1 1,006,799 + Dsui_0980 0.31 +0.1 1,006,799 + Dsui_0980 0.31 -0.8 1,006,822 + Dsui_0980 0.32 +0.4 1,006,830 - +0.4 1,006,900 - Dsui_0980 0.37 -0.6 1,007,432 + Dsui_0980 0.70 -0.2 1,007,530 - Dsui_0980 0.76 -0.6 1,007,654 - Dsui_0980 0.84 +0.4 1,007,751 + -1.6 1,007,790 + -0.5 1,008,053 + Dsui_0981 0.16 +0.9 1,008,084 - Dsui_0981 0.20 -1.4 1,008,613 + Dsui_0981 0.86 -0.3 1,008,637 - Dsui_0981 0.90 -0.6
Or see this region's nucleotide sequence