Strain Fitness in Dechlorosoma suillum PS around Dsui_0840

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0839 and Dsui_0840 are separated by 31 nucleotidesDsui_0840 and Dsui_0841 are separated by 148 nucleotidesDsui_0841 and Dsui_0842 overlap by 1 nucleotides Dsui_0839: Dsui_0839 - ABC-type branched-chain amino acid transport system, periplasmic component, at 853,853 to 855,007 _0839 Dsui_0840: Dsui_0840 - ABC-type branched-chain amino acid transport system, periplasmic component, at 855,039 to 856,208 _0840 Dsui_0841: Dsui_0841 - ABC-type branched-chain amino acid transport systems, ATPase component, at 856,357 to 857,112 _0841 Dsui_0842: Dsui_0842 - ABC-type branched-chain amino acid transport systems, ATPase component, at 857,112 to 858,893 _0842 Position (kb) 855 856 857Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 854.057 kb on + strand, within Dsui_0839at 854.057 kb on + strand, within Dsui_0839at 854.103 kb on - strandat 854.112 kb on + strand, within Dsui_0839at 854.115 kb on - strand, within Dsui_0839at 854.120 kb on - strand, within Dsui_0839at 854.151 kb on - strand, within Dsui_0839at 854.157 kb on - strand, within Dsui_0839at 854.161 kb on + strand, within Dsui_0839at 854.234 kb on + strand, within Dsui_0839at 854.264 kb on + strand, within Dsui_0839at 854.264 kb on + strand, within Dsui_0839at 854.272 kb on - strand, within Dsui_0839at 854.272 kb on - strand, within Dsui_0839at 854.303 kb on + strand, within Dsui_0839at 854.317 kb on - strand, within Dsui_0839at 854.391 kb on + strand, within Dsui_0839at 854.437 kb on - strand, within Dsui_0839at 854.523 kb on + strand, within Dsui_0839at 854.531 kb on - strand, within Dsui_0839at 854.557 kb on + strand, within Dsui_0839at 854.622 kb on + strand, within Dsui_0839at 854.629 kb on + strand, within Dsui_0839at 854.703 kb on + strand, within Dsui_0839at 854.722 kb on - strandat 854.800 kb on + strand, within Dsui_0839at 854.808 kb on - strand, within Dsui_0839at 854.862 kb on - strand, within Dsui_0839at 854.868 kb on - strand, within Dsui_0839at 854.874 kb on + strand, within Dsui_0839at 854.882 kb on - strand, within Dsui_0839at 854.882 kb on - strand, within Dsui_0839at 854.882 kb on - strand, within Dsui_0839at 854.928 kb on + strandat 854.937 kb on + strandat 854.938 kb on - strandat 854.942 kb on + strandat 854.950 kb on - strandat 855.047 kb on - strandat 855.079 kb on + strandat 855.091 kb on + strandat 855.095 kb on + strandat 855.136 kb on - strandat 855.136 kb on - strandat 855.235 kb on - strand, within Dsui_0840at 855.473 kb on - strandat 855.503 kb on + strand, within Dsui_0840at 855.514 kb on + strand, within Dsui_0840at 855.514 kb on + strand, within Dsui_0840at 855.542 kb on - strand, within Dsui_0840at 855.696 kb on - strand, within Dsui_0840at 855.729 kb on + strand, within Dsui_0840at 855.737 kb on - strand, within Dsui_0840at 855.758 kb on + strand, within Dsui_0840at 855.768 kb on + strand, within Dsui_0840at 855.776 kb on - strand, within Dsui_0840at 855.909 kb on + strand, within Dsui_0840at 855.919 kb on + strand, within Dsui_0840at 855.985 kb on - strand, within Dsui_0840at 856.009 kb on + strand, within Dsui_0840at 856.014 kb on + strand, within Dsui_0840at 856.045 kb on + strand, within Dsui_0840at 856.045 kb on - strand, within Dsui_0840at 856.055 kb on + strandat 856.095 kb on - strandat 856.105 kb on + strandat 856.105 kb on + strandat 856.105 kb on + strandat 856.105 kb on + strandat 856.113 kb on + strandat 856.113 kb on - strandat 856.113 kb on - strandat 856.120 kb on + strandat 856.129 kb on - strandat 856.169 kb on + strandat 856.172 kb on - strandat 856.394 kb on - strandat 856.419 kb on + strandat 856.601 kb on - strand, within Dsui_0841at 856.723 kb on + strandat 856.734 kb on + strand, within Dsui_0841at 856.750 kb on - strand, within Dsui_0841at 856.776 kb on + strand, within Dsui_0841at 856.819 kb on + strand, within Dsui_0841at 856.857 kb on - strand, within Dsui_0841at 856.859 kb on + strand, within Dsui_0841at 856.863 kb on - strand, within Dsui_0841at 856.882 kb on + strand, within Dsui_0841at 856.952 kb on - strand, within Dsui_0841at 856.962 kb on - strand, within Dsui_0841at 857.022 kb on + strand, within Dsui_0841at 857.030 kb on - strand, within Dsui_0841at 857.030 kb on - strand, within Dsui_0841at 857.095 kb on - strandat 857.118 kb on - strandat 857.130 kb on - strandat 857.130 kb on - strandat 857.164 kb on + strandat 857.207 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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854,057 + Dsui_0839 0.18 -1.2
854,057 + Dsui_0839 0.18 +0.4
854,103 - +0.4
854,112 + Dsui_0839 0.22 -1.6
854,115 - Dsui_0839 0.23 -1.2
854,120 - Dsui_0839 0.23 -0.6
854,151 - Dsui_0839 0.26 -1.9
854,157 - Dsui_0839 0.26 -0.6
854,161 + Dsui_0839 0.27 +1.4
854,234 + Dsui_0839 0.33 +0.4
854,264 + Dsui_0839 0.36 -0.6
854,264 + Dsui_0839 0.36 -0.6
854,272 - Dsui_0839 0.36 +0.4
854,272 - Dsui_0839 0.36 -1.9
854,303 + Dsui_0839 0.39 -0.6
854,317 - Dsui_0839 0.40 +0.4
854,391 + Dsui_0839 0.47 +0.4
854,437 - Dsui_0839 0.51 +0.4
854,523 + Dsui_0839 0.58 +0.4
854,531 - Dsui_0839 0.59 -0.6
854,557 + Dsui_0839 0.61 -0.6
854,622 + Dsui_0839 0.67 -1.2
854,629 + Dsui_0839 0.67 -0.6
854,703 + Dsui_0839 0.74 -3.2
854,722 - +0.4
854,800 + Dsui_0839 0.82 -1.2
854,808 - Dsui_0839 0.83 -1.2
854,862 - Dsui_0839 0.87 -0.6
854,868 - Dsui_0839 0.88 -0.6
854,874 + Dsui_0839 0.88 -0.6
854,882 - Dsui_0839 0.89 +0.4
854,882 - Dsui_0839 0.89 -3.5
854,882 - Dsui_0839 0.89 -2.4
854,928 + -1.2
854,937 + -2.4
854,938 - -3.6
854,942 + +0.4
854,950 - -1.2
855,047 - -1.2
855,079 + -3.2
855,091 + -0.6
855,095 + -0.6
855,136 - +0.4
855,136 - -0.6
855,235 - Dsui_0840 0.17 -0.6
855,473 - +0.4
855,503 + Dsui_0840 0.40 -0.6
855,514 + Dsui_0840 0.41 +0.4
855,514 + Dsui_0840 0.41 +0.4
855,542 - Dsui_0840 0.43 -0.6
855,696 - Dsui_0840 0.56 -1.6
855,729 + Dsui_0840 0.59 -3.9
855,737 - Dsui_0840 0.60 -0.6
855,758 + Dsui_0840 0.61 +0.4
855,768 + Dsui_0840 0.62 -0.6
855,776 - Dsui_0840 0.63 -1.8
855,909 + Dsui_0840 0.74 +0.4
855,919 + Dsui_0840 0.75 +0.4
855,985 - Dsui_0840 0.81 -0.6
856,009 + Dsui_0840 0.83 -0.6
856,014 + Dsui_0840 0.83 -0.6
856,045 + Dsui_0840 0.86 -1.3
856,045 - Dsui_0840 0.86 +0.4
856,055 + +0.4
856,095 - -0.6
856,105 + -0.6
856,105 + -1.2
856,105 + +0.4
856,105 + -2.4
856,113 + +0.4
856,113 - +0.4
856,113 - -2.8
856,120 + -1.9
856,129 - -0.8
856,169 + +0.4
856,172 - -0.8
856,394 - -0.4
856,419 + +0.4
856,601 - Dsui_0841 0.32 +0.0
856,723 + +0.4
856,734 + Dsui_0841 0.50 +0.4
856,750 - Dsui_0841 0.52 +0.0
856,776 + Dsui_0841 0.55 -1.2
856,819 + Dsui_0841 0.61 -0.8
856,857 - Dsui_0841 0.66 -0.1
856,859 + Dsui_0841 0.66 -1.9
856,863 - Dsui_0841 0.67 -0.3
856,882 + Dsui_0841 0.69 -0.6
856,952 - Dsui_0841 0.79 -0.0
856,962 - Dsui_0841 0.80 +0.5
857,022 + Dsui_0841 0.88 -0.6
857,030 - Dsui_0841 0.89 +0.0
857,030 - Dsui_0841 0.89 -0.0
857,095 - -0.4
857,118 - -0.1
857,130 - +0.1
857,130 - +0.2
857,164 + -1.4
857,207 + +0.1

Or see this region's nucleotide sequence