Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0805 and Dsui_0806 are separated by 651 nucleotides Dsui_0806 and Dsui_0807 are separated by 99 nucleotides
Dsui_0805: Dsui_0805 - primosomal protein N'', at 812,513 to 814,537
_0805
Dsui_0806: Dsui_0806 - uroporphyrinogen decarboxylase, at 815,189 to 816,271
_0806
Dsui_0807: Dsui_0807 - Trk-type K+ transport system, membrane component, at 816,371 to 817,828
_0807
Position (kb) 815
816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 814.583 kb on + strand at 814.584 kb on + strand at 814.584 kb on + strand at 814.608 kb on - strand at 814.659 kb on + strand at 814.671 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.686 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.695 kb on + strand at 814.703 kb on - strand at 814.706 kb on + strand at 814.740 kb on + strand at 814.748 kb on - strand at 814.794 kb on + strand at 814.830 kb on + strand at 814.831 kb on + strand at 814.831 kb on + strand at 814.838 kb on - strand at 814.842 kb on + strand at 814.851 kb on - strand at 814.874 kb on + strand at 814.926 kb on - strand at 814.954 kb on + strand at 814.962 kb on - strand at 814.962 kb on - strand at 814.976 kb on + strand at 814.980 kb on - strand at 815.002 kb on + strand at 815.010 kb on - strand at 815.021 kb on - strand at 815.038 kb on - strand at 815.043 kb on - strand at 815.043 kb on - strand at 815.128 kb on - strand at 815.128 kb on - strand at 815.171 kb on + strand at 815.181 kb on + strand at 815.182 kb on + strand at 815.189 kb on - strand at 816.326 kb on + strand at 816.326 kb on + strand at 816.447 kb on + strand at 816.458 kb on + strand at 816.475 kb on + strand at 816.478 kb on - strand at 816.544 kb on - strand, within Dsui_0807 at 816.592 kb on + strand, within Dsui_0807 at 816.623 kb on - strand, within Dsui_0807 at 816.640 kb on - strand, within Dsui_0807 at 816.640 kb on - strand, within Dsui_0807 at 816.640 kb on - strand, within Dsui_0807 at 816.719 kb on - strand, within Dsui_0807 at 816.729 kb on - strand, within Dsui_0807 at 816.751 kb on - strand, within Dsui_0807 at 816.779 kb on + strand, within Dsui_0807 at 816.819 kb on + strand, within Dsui_0807 at 816.819 kb on + strand, within Dsui_0807 at 816.837 kb on - strand, within Dsui_0807 at 816.849 kb on + strand, within Dsui_0807 at 816.856 kb on - strand, within Dsui_0807 at 816.857 kb on - strand, within Dsui_0807 at 816.857 kb on - strand, within Dsui_0807 at 816.861 kb on - strand, within Dsui_0807 at 816.864 kb on + strand at 816.876 kb on - strand, within Dsui_0807 at 816.906 kb on + strand, within Dsui_0807 at 816.911 kb on + strand, within Dsui_0807 at 816.914 kb on - strand, within Dsui_0807 at 816.914 kb on - strand, within Dsui_0807 at 816.914 kb on - strand, within Dsui_0807 at 816.919 kb on - strand, within Dsui_0807 at 816.929 kb on - strand, within Dsui_0807 at 816.932 kb on + strand, within Dsui_0807 at 816.963 kb on - strand, within Dsui_0807 at 817.017 kb on - strand, within Dsui_0807 at 817.036 kb on + strand, within Dsui_0807 at 817.038 kb on - strand, within Dsui_0807 at 817.066 kb on - strand, within Dsui_0807 at 817.080 kb on + strand, within Dsui_0807 at 817.080 kb on + strand, within Dsui_0807 at 817.081 kb on - strand, within Dsui_0807 at 817.085 kb on + strand, within Dsui_0807 at 817.085 kb on - strand at 817.098 kb on - strand, within Dsui_0807 at 817.125 kb on + strand, within Dsui_0807 at 817.141 kb on + strand, within Dsui_0807 at 817.171 kb on + strand, within Dsui_0807 at 817.179 kb on - strand, within Dsui_0807 at 817.179 kb on - strand, within Dsui_0807 at 817.179 kb on - strand, within Dsui_0807 at 817.221 kb on + strand, within Dsui_0807 at 817.229 kb on - strand, within Dsui_0807 at 817.234 kb on - strand, within Dsui_0807 at 817.261 kb on - strand, within Dsui_0807
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 814,583 + -1.6 814,584 + +0.4 814,584 + +0.4 814,608 - -1.2 814,659 + +0.4 814,671 + +0.4 814,683 + -0.6 814,683 + +0.4 814,683 + -1.2 814,683 + +0.4 814,683 + -0.6 814,683 + -1.6 814,683 + +0.4 814,686 - +0.4 814,691 - -0.6 814,691 - -0.6 814,691 - -1.6 814,691 - +0.4 814,691 - +0.4 814,691 - +0.4 814,695 + +0.4 814,703 - -1.2 814,706 + +0.4 814,740 + +0.4 814,748 - +0.4 814,794 + -0.6 814,830 + -0.6 814,831 + +0.8 814,831 + -0.6 814,838 - -1.6 814,842 + -0.3 814,851 - -0.2 814,874 + -0.6 814,926 - -1.3 814,954 + -1.6 814,962 - -0.6 814,962 - +0.0 814,976 + -0.6 814,980 - +1.5 815,002 + -0.5 815,010 - +0.4 815,021 - +0.4 815,038 - -0.4 815,043 - -0.5 815,043 - -0.0 815,128 - +0.1 815,128 - +0.2 815,171 + -0.1 815,181 + -0.8 815,182 + -0.6 815,189 - +0.3 816,326 + -0.9 816,326 + -0.8 816,447 + -0.6 816,458 + -1.6 816,475 + -1.4 816,478 - -0.5 816,544 - Dsui_0807 0.12 -0.6 816,592 + Dsui_0807 0.15 -0.6 816,623 - Dsui_0807 0.17 -0.1 816,640 - Dsui_0807 0.18 -0.2 816,640 - Dsui_0807 0.18 -0.1 816,640 - Dsui_0807 0.18 -0.1 816,719 - Dsui_0807 0.24 +0.0 816,729 - Dsui_0807 0.25 -0.4 816,751 - Dsui_0807 0.26 -0.6 816,779 + Dsui_0807 0.28 -1.9 816,819 + Dsui_0807 0.31 -1.6 816,819 + Dsui_0807 0.31 -1.2 816,837 - Dsui_0807 0.32 -0.3 816,849 + Dsui_0807 0.33 -0.8 816,856 - Dsui_0807 0.33 -0.0 816,857 - Dsui_0807 0.33 -0.2 816,857 - Dsui_0807 0.33 -0.1 816,861 - Dsui_0807 0.34 +0.1 816,864 + +0.4 816,876 - Dsui_0807 0.35 -0.5 816,906 + Dsui_0807 0.37 -1.6 816,911 + Dsui_0807 0.37 +0.1 816,914 - Dsui_0807 0.37 -0.1 816,914 - Dsui_0807 0.37 +0.9 816,914 - Dsui_0807 0.37 -1.2 816,919 - Dsui_0807 0.38 -0.9 816,929 - Dsui_0807 0.38 -0.2 816,932 + Dsui_0807 0.38 +0.4 816,963 - Dsui_0807 0.41 +0.5 817,017 - Dsui_0807 0.44 +0.2 817,036 + Dsui_0807 0.46 +0.2 817,038 - Dsui_0807 0.46 +0.9 817,066 - Dsui_0807 0.48 +0.3 817,080 + Dsui_0807 0.49 -1.6 817,080 + Dsui_0807 0.49 -2.2 817,081 - Dsui_0807 0.49 -3.0 817,085 + Dsui_0807 0.49 +0.4 817,085 - +0.4 817,098 - Dsui_0807 0.50 -0.2 817,125 + Dsui_0807 0.52 -0.6 817,141 + Dsui_0807 0.53 -0.3 817,171 + Dsui_0807 0.55 -0.3 817,179 - Dsui_0807 0.55 -0.9 817,179 - Dsui_0807 0.55 -0.2 817,179 - Dsui_0807 0.55 -0.3 817,221 + Dsui_0807 0.58 +0.4 817,229 - Dsui_0807 0.59 -0.6 817,234 - Dsui_0807 0.59 +1.4 817,261 - Dsui_0807 0.61 +0.0
Or see this region's nucleotide sequence