Strain Fitness in Dechlorosoma suillum PS around Dsui_0804

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0803 and Dsui_0804 are separated by 10 nucleotidesDsui_0804 and Dsui_0805 are separated by 200 nucleotides Dsui_0803: Dsui_0803 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 808,916 to 811,168 _0803 Dsui_0804: Dsui_0804 - hypothetical protein, at 811,179 to 812,312 _0804 Dsui_0805: Dsui_0805 - primosomal protein N'', at 812,513 to 814,537 _0805 Position (kb) 811 812 813Strain fitness (log2 ratio) -2 -1 0 1at 810.228 kb on + strand, within Dsui_0803at 810.235 kb on + strand, within Dsui_0803at 810.236 kb on - strand, within Dsui_0803at 810.305 kb on - strand, within Dsui_0803at 810.336 kb on + strand, within Dsui_0803at 810.343 kb on + strand, within Dsui_0803at 810.389 kb on + strand, within Dsui_0803at 810.422 kb on + strand, within Dsui_0803at 810.425 kb on - strandat 810.505 kb on + strand, within Dsui_0803at 810.528 kb on - strand, within Dsui_0803at 810.543 kb on + strand, within Dsui_0803at 810.578 kb on - strand, within Dsui_0803at 810.611 kb on - strand, within Dsui_0803at 810.624 kb on - strand, within Dsui_0803at 810.657 kb on + strand, within Dsui_0803at 810.675 kb on + strand, within Dsui_0803at 810.675 kb on + strand, within Dsui_0803at 810.704 kb on - strand, within Dsui_0803at 810.715 kb on - strand, within Dsui_0803at 810.740 kb on - strand, within Dsui_0803at 810.743 kb on + strand, within Dsui_0803at 810.746 kb on - strand, within Dsui_0803at 810.751 kb on - strand, within Dsui_0803at 810.751 kb on - strand, within Dsui_0803at 810.752 kb on - strand, within Dsui_0803at 810.768 kb on + strand, within Dsui_0803at 810.776 kb on - strand, within Dsui_0803at 810.776 kb on - strand, within Dsui_0803at 810.776 kb on - strand, within Dsui_0803at 810.779 kb on + strand, within Dsui_0803at 810.784 kb on + strand, within Dsui_0803at 810.848 kb on - strand, within Dsui_0803at 810.867 kb on - strand, within Dsui_0803at 810.904 kb on + strand, within Dsui_0803at 810.923 kb on + strand, within Dsui_0803at 810.961 kb on + strandat 810.991 kb on + strandat 810.998 kb on + strandat 811.057 kb on - strandat 811.059 kb on + strandat 811.059 kb on + strandat 811.069 kb on + strandat 811.083 kb on - strandat 811.170 kb on - strandat 811.171 kb on - strandat 811.184 kb on - strandat 811.196 kb on - strandat 811.218 kb on - strandat 811.225 kb on + strandat 811.243 kb on - strandat 811.265 kb on + strandat 811.350 kb on + strand, within Dsui_0804at 811.362 kb on + strand, within Dsui_0804at 811.379 kb on - strand, within Dsui_0804at 811.526 kb on + strand, within Dsui_0804at 811.589 kb on + strand, within Dsui_0804at 811.600 kb on + strand, within Dsui_0804at 811.625 kb on + strand, within Dsui_0804at 811.731 kb on + strandat 811.746 kb on - strand, within Dsui_0804at 811.815 kb on + strand, within Dsui_0804at 811.847 kb on + strand, within Dsui_0804at 811.855 kb on - strand, within Dsui_0804at 811.855 kb on - strand, within Dsui_0804at 811.880 kb on + strand, within Dsui_0804at 811.884 kb on + strand, within Dsui_0804at 811.884 kb on + strandat 811.892 kb on - strand, within Dsui_0804at 811.894 kb on - strand, within Dsui_0804at 811.902 kb on - strand, within Dsui_0804at 811.945 kb on + strand, within Dsui_0804at 811.953 kb on - strand, within Dsui_0804at 811.955 kb on + strand, within Dsui_0804at 811.963 kb on - strand, within Dsui_0804at 811.970 kb on + strand, within Dsui_0804at 811.970 kb on + strand, within Dsui_0804at 811.978 kb on - strand, within Dsui_0804at 812.012 kb on - strand, within Dsui_0804at 812.063 kb on + strand, within Dsui_0804at 812.063 kb on + strand, within Dsui_0804at 812.153 kb on + strand, within Dsui_0804at 812.232 kb on - strandat 812.266 kb on + strandat 812.332 kb on - strandat 812.346 kb on + strandat 812.353 kb on - strandat 812.354 kb on - strandat 812.459 kb on - strandat 812.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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810,228 + Dsui_0803 0.58 +0.4
810,235 + Dsui_0803 0.59 -0.6
810,236 - Dsui_0803 0.59 +0.4
810,305 - Dsui_0803 0.62 -1.3
810,336 + Dsui_0803 0.63 -1.4
810,343 + Dsui_0803 0.63 -0.6
810,389 + Dsui_0803 0.65 +0.4
810,422 + Dsui_0803 0.67 +0.9
810,425 - +0.4
810,505 + Dsui_0803 0.71 -0.6
810,528 - Dsui_0803 0.72 -1.2
810,543 + Dsui_0803 0.72 +1.4
810,578 - Dsui_0803 0.74 -1.2
810,611 - Dsui_0803 0.75 +0.4
810,624 - Dsui_0803 0.76 +0.4
810,657 + Dsui_0803 0.77 -0.2
810,675 + Dsui_0803 0.78 -0.1
810,675 + Dsui_0803 0.78 -0.7
810,704 - Dsui_0803 0.79 -2.2
810,715 - Dsui_0803 0.80 +0.4
810,740 - Dsui_0803 0.81 -0.6
810,743 + Dsui_0803 0.81 +0.9
810,746 - Dsui_0803 0.81 -1.6
810,751 - Dsui_0803 0.81 -2.4
810,751 - Dsui_0803 0.81 -0.7
810,752 - Dsui_0803 0.81 -1.2
810,768 + Dsui_0803 0.82 -2.2
810,776 - Dsui_0803 0.83 -0.6
810,776 - Dsui_0803 0.83 -2.2
810,776 - Dsui_0803 0.83 -1.2
810,779 + Dsui_0803 0.83 -2.6
810,784 + Dsui_0803 0.83 +1.1
810,848 - Dsui_0803 0.86 +0.4
810,867 - Dsui_0803 0.87 -0.6
810,904 + Dsui_0803 0.88 -0.6
810,923 + Dsui_0803 0.89 +0.2
810,961 + +1.2
810,991 + -0.4
810,998 + +1.5
811,057 - -0.6
811,059 + -0.7
811,059 + +0.4
811,069 + -0.2
811,083 - -1.9
811,170 - -2.3
811,171 - +1.4
811,184 - -2.6
811,196 - -1.4
811,218 - -0.2
811,225 + -1.8
811,243 - -2.6
811,265 + -1.8
811,350 + Dsui_0804 0.15 -0.6
811,362 + Dsui_0804 0.16 +0.4
811,379 - Dsui_0804 0.18 +0.4
811,526 + Dsui_0804 0.31 -1.2
811,589 + Dsui_0804 0.36 -1.2
811,600 + Dsui_0804 0.37 -0.8
811,625 + Dsui_0804 0.39 -2.2
811,731 + -0.6
811,746 - Dsui_0804 0.50 +0.4
811,815 + Dsui_0804 0.56 +0.4
811,847 + Dsui_0804 0.59 -0.6
811,855 - Dsui_0804 0.60 -1.2
811,855 - Dsui_0804 0.60 -1.2
811,880 + Dsui_0804 0.62 -1.2
811,884 + Dsui_0804 0.62 -1.6
811,884 + +0.4
811,892 - Dsui_0804 0.63 +1.4
811,894 - Dsui_0804 0.63 -1.6
811,902 - Dsui_0804 0.64 +0.4
811,945 + Dsui_0804 0.68 -0.6
811,953 - Dsui_0804 0.68 +0.4
811,955 + Dsui_0804 0.68 -0.6
811,963 - Dsui_0804 0.69 -1.6
811,970 + Dsui_0804 0.70 -2.2
811,970 + Dsui_0804 0.70 -2.6
811,978 - Dsui_0804 0.70 -1.9
812,012 - Dsui_0804 0.73 -1.6
812,063 + Dsui_0804 0.78 -2.4
812,063 + Dsui_0804 0.78 -0.6
812,153 + Dsui_0804 0.86 +0.4
812,232 - -1.2
812,266 + -0.6
812,332 - +0.4
812,346 + -1.9
812,353 - +0.4
812,354 - +0.0
812,459 - +0.0
812,485 - +0.1

Or see this region's nucleotide sequence