Strain Fitness in Dechlorosoma suillum PS around Dsui_0800

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0799 and Dsui_0800 are separated by 70 nucleotidesDsui_0800 and Dsui_0801 are separated by 231 nucleotides Dsui_0799: Dsui_0799 - succinate CoA transferase, at 804,811 to 806,370 _0799 Dsui_0800: Dsui_0800 - hypothetical protein (DUF2059), at 806,441 to 806,956 _0800 Dsui_0801: Dsui_0801 - transcriptional regulator/sugar kinase, at 807,188 to 808,078 _0801 Position (kb) 806 807Strain fitness (log2 ratio) -2 -1 0 1 2at 805.501 kb on + strand, within Dsui_0799at 805.509 kb on - strand, within Dsui_0799at 805.526 kb on - strand, within Dsui_0799at 805.564 kb on - strand, within Dsui_0799at 805.681 kb on + strand, within Dsui_0799at 805.696 kb on + strand, within Dsui_0799at 805.732 kb on + strand, within Dsui_0799at 805.734 kb on + strand, within Dsui_0799at 805.785 kb on - strand, within Dsui_0799at 805.799 kb on + strand, within Dsui_0799at 805.807 kb on - strand, within Dsui_0799at 805.921 kb on + strand, within Dsui_0799at 806.004 kb on - strand, within Dsui_0799at 806.018 kb on - strand, within Dsui_0799at 806.018 kb on - strand, within Dsui_0799at 806.020 kb on - strand, within Dsui_0799at 806.054 kb on - strand, within Dsui_0799at 806.081 kb on + strand, within Dsui_0799at 806.157 kb on + strand, within Dsui_0799at 806.165 kb on - strand, within Dsui_0799at 806.255 kb on + strandat 806.263 kb on - strandat 806.275 kb on + strandat 806.312 kb on - strandat 806.357 kb on - strandat 806.364 kb on + strandat 806.401 kb on - strandat 806.415 kb on - strandat 806.439 kb on + strandat 806.439 kb on + strandat 806.447 kb on - strandat 806.491 kb on - strandat 806.493 kb on + strand, within Dsui_0800at 806.501 kb on - strand, within Dsui_0800at 806.501 kb on - strand, within Dsui_0800at 806.543 kb on + strand, within Dsui_0800at 806.601 kb on - strand, within Dsui_0800at 806.610 kb on + strandat 806.684 kb on + strand, within Dsui_0800at 806.784 kb on + strand, within Dsui_0800at 806.797 kb on - strand, within Dsui_0800at 806.802 kb on + strand, within Dsui_0800at 806.809 kb on - strand, within Dsui_0800at 806.810 kb on - strand, within Dsui_0800at 806.901 kb on + strand, within Dsui_0800at 806.946 kb on + strandat 806.988 kb on - strandat 807.170 kb on - strandat 807.178 kb on + strandat 807.186 kb on - strandat 807.228 kb on - strandat 807.328 kb on - strand, within Dsui_0801at 807.344 kb on + strand, within Dsui_0801at 807.460 kb on + strand, within Dsui_0801at 807.510 kb on + strand, within Dsui_0801at 807.510 kb on + strand, within Dsui_0801at 807.510 kb on + strand, within Dsui_0801at 807.582 kb on - strand, within Dsui_0801at 807.604 kb on - strand, within Dsui_0801at 807.880 kb on + strand, within Dsui_0801at 807.880 kb on + strand, within Dsui_0801at 807.888 kb on - strand, within Dsui_0801at 807.889 kb on - strandat 807.955 kb on - strandat 807.955 kb on - strand, within Dsui_0801

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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805,501 + Dsui_0799 0.44 -0.9
805,509 - Dsui_0799 0.45 -1.2
805,526 - Dsui_0799 0.46 +0.4
805,564 - Dsui_0799 0.48 -1.2
805,681 + Dsui_0799 0.56 +0.7
805,696 + Dsui_0799 0.57 -0.4
805,732 + Dsui_0799 0.59 -0.6
805,734 + Dsui_0799 0.59 -0.1
805,785 - Dsui_0799 0.62 -2.4
805,799 + Dsui_0799 0.63 -1.0
805,807 - Dsui_0799 0.64 -1.9
805,921 + Dsui_0799 0.71 -0.7
806,004 - Dsui_0799 0.76 -0.6
806,018 - Dsui_0799 0.77 -1.2
806,018 - Dsui_0799 0.77 -1.2
806,020 - Dsui_0799 0.78 -1.2
806,054 - Dsui_0799 0.80 -0.8
806,081 + Dsui_0799 0.81 -0.5
806,157 + Dsui_0799 0.86 +0.6
806,165 - Dsui_0799 0.87 -2.2
806,255 + +0.2
806,263 - -0.6
806,275 + -0.6
806,312 - -1.2
806,357 - -0.6
806,364 + +0.2
806,401 - -0.3
806,415 - -0.5
806,439 + +0.4
806,439 + +0.4
806,447 - -0.3
806,491 - +0.2
806,493 + Dsui_0800 0.10 -1.6
806,501 - Dsui_0800 0.12 +0.3
806,501 - Dsui_0800 0.12 -1.4
806,543 + Dsui_0800 0.20 +0.4
806,601 - Dsui_0800 0.31 -0.8
806,610 + -0.6
806,684 + Dsui_0800 0.47 -1.2
806,784 + Dsui_0800 0.66 -1.6
806,797 - Dsui_0800 0.69 -1.1
806,802 + Dsui_0800 0.70 -1.9
806,809 - Dsui_0800 0.71 -0.6
806,810 - Dsui_0800 0.72 -0.9
806,901 + Dsui_0800 0.89 +0.4
806,946 + +0.4
806,988 - -1.2
807,170 - +0.4
807,178 + +0.4
807,186 - -0.4
807,228 - -0.6
807,328 - Dsui_0801 0.16 +2.4
807,344 + Dsui_0801 0.18 -0.7
807,460 + Dsui_0801 0.31 -0.2
807,510 + Dsui_0801 0.36 -1.0
807,510 + Dsui_0801 0.36 +0.5
807,510 + Dsui_0801 0.36 -0.3
807,582 - Dsui_0801 0.44 +0.4
807,604 - Dsui_0801 0.47 -0.6
807,880 + Dsui_0801 0.78 -0.2
807,880 + Dsui_0801 0.78 -0.3
807,888 - Dsui_0801 0.79 -2.2
807,889 - -0.6
807,955 - +0.4
807,955 - Dsui_0801 0.86 -0.6

Or see this region's nucleotide sequence