Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0777 and Dsui_0778 overlap by 4 nucleotides Dsui_0778 and Dsui_0779 are separated by 249 nucleotides
Dsui_0777: Dsui_0777 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 781,577 to 782,740
_0777
Dsui_0778: Dsui_0778 - small protein A (tmRNA-binding), at 782,737 to 783,222
_0778
Dsui_0779: Dsui_0779 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 783,472 to 787,152
_0779
Position (kb) 782
783
784 Strain fitness (log2 ratio) -2
-1
0
1 at 781.743 kb on + strand, within Dsui_0777 at 781.771 kb on + strand, within Dsui_0777 at 781.782 kb on + strand, within Dsui_0777 at 781.782 kb on + strand, within Dsui_0777 at 781.782 kb on + strand, within Dsui_0777 at 781.784 kb on - strand, within Dsui_0777 at 781.790 kb on - strand, within Dsui_0777 at 781.794 kb on + strand, within Dsui_0777 at 781.806 kb on + strand, within Dsui_0777 at 781.881 kb on + strand, within Dsui_0777 at 781.908 kb on + strand, within Dsui_0777 at 782.031 kb on + strand, within Dsui_0777 at 782.082 kb on - strand, within Dsui_0777 at 782.205 kb on - strand at 782.300 kb on - strand, within Dsui_0777 at 782.325 kb on + strand, within Dsui_0777 at 782.347 kb on + strand, within Dsui_0777 at 782.362 kb on - strand, within Dsui_0777 at 782.447 kb on + strand, within Dsui_0777 at 782.447 kb on + strand, within Dsui_0777 at 782.448 kb on + strand, within Dsui_0777 at 782.496 kb on - strand, within Dsui_0777 at 782.575 kb on - strand, within Dsui_0777 at 782.674 kb on + strand at 782.737 kb on + strand at 782.777 kb on - strand at 782.917 kb on - strand at 782.962 kb on - strand, within Dsui_0778 at 782.989 kb on - strand, within Dsui_0778 at 782.989 kb on - strand, within Dsui_0778 at 782.999 kb on - strand, within Dsui_0778 at 783.035 kb on + strand, within Dsui_0778 at 783.055 kb on + strand, within Dsui_0778 at 783.216 kb on + strand at 783.306 kb on + strand at 783.314 kb on - strand at 783.364 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 781,743 + Dsui_0777 0.14 +1.0 781,771 + Dsui_0777 0.17 -0.2 781,782 + Dsui_0777 0.18 -0.6 781,782 + Dsui_0777 0.18 +0.2 781,782 + Dsui_0777 0.18 +0.4 781,784 - Dsui_0777 0.18 -2.2 781,790 - Dsui_0777 0.18 -2.6 781,794 + Dsui_0777 0.19 +0.4 781,806 + Dsui_0777 0.20 -0.2 781,881 + Dsui_0777 0.26 -1.2 781,908 + Dsui_0777 0.28 -1.6 782,031 + Dsui_0777 0.39 -1.6 782,082 - Dsui_0777 0.43 +0.4 782,205 - -1.2 782,300 - Dsui_0777 0.62 -1.6 782,325 + Dsui_0777 0.64 -1.4 782,347 + Dsui_0777 0.66 -0.2 782,362 - Dsui_0777 0.67 -2.4 782,447 + Dsui_0777 0.75 +0.9 782,447 + Dsui_0777 0.75 -0.6 782,448 + Dsui_0777 0.75 +0.4 782,496 - Dsui_0777 0.79 -2.2 782,575 - Dsui_0777 0.86 -1.2 782,674 + +0.4 782,737 + +0.4 782,777 - -0.6 782,917 - +0.4 782,962 - Dsui_0778 0.46 +0.4 782,989 - Dsui_0778 0.52 -1.9 782,989 - Dsui_0778 0.52 +0.4 782,999 - Dsui_0778 0.54 -2.4 783,035 + Dsui_0778 0.61 -0.8 783,055 + Dsui_0778 0.65 -1.4 783,216 + -0.0 783,306 + -0.0 783,314 - -1.2 783,364 + +0.1
Or see this region's nucleotide sequence