Strain Fitness in Dechlorosoma suillum PS around Dsui_0776

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0775 and Dsui_0776 are separated by 54 nucleotidesDsui_0776 and Dsui_0777 are separated by 11 nucleotides Dsui_0775: Dsui_0775 - drug resistance transporter, Bcr/CflA subfamily, at 776,397 to 777,590 _0775 Dsui_0776: Dsui_0776 - PAS domain S-box, at 777,645 to 781,565 _0776 Dsui_0777: Dsui_0777 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 781,577 to 782,740 _0777 Position (kb) 777 778 779 780 781 782Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 776.656 kb on + strand, within Dsui_0775at 776.692 kb on - strand, within Dsui_0775at 776.692 kb on - strand, within Dsui_0775at 776.736 kb on - strand, within Dsui_0775at 776.741 kb on - strand, within Dsui_0775at 776.743 kb on + strand, within Dsui_0775at 776.778 kb on + strand, within Dsui_0775at 776.815 kb on + strand, within Dsui_0775at 776.886 kb on - strand, within Dsui_0775at 776.888 kb on + strand, within Dsui_0775at 776.895 kb on + strand, within Dsui_0775at 777.001 kb on + strand, within Dsui_0775at 777.024 kb on + strand, within Dsui_0775at 777.024 kb on + strand, within Dsui_0775at 777.098 kb on - strand, within Dsui_0775at 777.105 kb on + strand, within Dsui_0775at 777.111 kb on + strand, within Dsui_0775at 777.111 kb on + strand, within Dsui_0775at 777.111 kb on + strand, within Dsui_0775at 777.142 kb on - strand, within Dsui_0775at 777.142 kb on - strand, within Dsui_0775at 777.163 kb on - strand, within Dsui_0775at 777.168 kb on - strand, within Dsui_0775at 777.224 kb on - strandat 777.278 kb on + strand, within Dsui_0775at 777.283 kb on + strand, within Dsui_0775at 777.291 kb on - strandat 777.291 kb on - strand, within Dsui_0775at 777.330 kb on + strand, within Dsui_0775at 777.354 kb on + strand, within Dsui_0775at 777.356 kb on - strand, within Dsui_0775at 777.362 kb on - strand, within Dsui_0775at 777.372 kb on - strand, within Dsui_0775at 777.379 kb on + strand, within Dsui_0775at 777.379 kb on + strand, within Dsui_0775at 777.405 kb on + strandat 777.474 kb on + strandat 777.534 kb on + strandat 777.547 kb on + strandat 777.547 kb on - strandat 777.552 kb on - strandat 777.561 kb on + strandat 777.624 kb on + strandat 777.649 kb on + strandat 777.654 kb on + strandat 777.666 kb on - strandat 777.711 kb on + strandat 777.750 kb on - strandat 777.760 kb on - strandat 777.777 kb on + strandat 777.777 kb on + strandat 777.777 kb on + strandat 777.785 kb on - strandat 777.822 kb on + strandat 777.844 kb on + strandat 777.854 kb on + strandat 777.855 kb on + strandat 777.862 kb on - strandat 777.901 kb on + strandat 777.925 kb on + strandat 777.933 kb on - strandat 777.996 kb on - strandat 778.049 kb on + strand, within Dsui_0776at 778.072 kb on + strand, within Dsui_0776at 778.100 kb on - strandat 778.170 kb on - strand, within Dsui_0776at 778.190 kb on - strand, within Dsui_0776at 778.200 kb on + strand, within Dsui_0776at 778.200 kb on + strand, within Dsui_0776at 778.205 kb on + strand, within Dsui_0776at 778.217 kb on + strand, within Dsui_0776at 778.218 kb on - strandat 778.225 kb on - strand, within Dsui_0776at 778.242 kb on - strand, within Dsui_0776at 778.257 kb on - strand, within Dsui_0776at 778.257 kb on - strand, within Dsui_0776at 778.281 kb on + strand, within Dsui_0776at 778.300 kb on + strand, within Dsui_0776at 778.300 kb on + strandat 778.308 kb on - strand, within Dsui_0776at 778.374 kb on + strand, within Dsui_0776at 778.550 kb on - strand, within Dsui_0776at 778.567 kb on + strandat 778.698 kb on - strand, within Dsui_0776at 778.701 kb on + strand, within Dsui_0776at 778.772 kb on - strand, within Dsui_0776at 778.814 kb on - strand, within Dsui_0776at 778.890 kb on + strand, within Dsui_0776at 778.924 kb on + strand, within Dsui_0776at 778.924 kb on + strand, within Dsui_0776at 778.924 kb on + strand, within Dsui_0776at 778.932 kb on - strandat 779.041 kb on + strandat 779.073 kb on - strandat 779.171 kb on - strand, within Dsui_0776at 779.240 kb on + strand, within Dsui_0776at 779.243 kb on - strandat 779.262 kb on - strand, within Dsui_0776at 779.290 kb on - strandat 779.301 kb on + strand, within Dsui_0776at 779.359 kb on - strand, within Dsui_0776at 779.445 kb on + strand, within Dsui_0776at 779.544 kb on + strand, within Dsui_0776at 779.582 kb on + strand, within Dsui_0776at 779.634 kb on - strand, within Dsui_0776at 779.641 kb on + strand, within Dsui_0776at 779.670 kb on - strand, within Dsui_0776at 779.727 kb on - strand, within Dsui_0776at 779.753 kb on + strand, within Dsui_0776at 779.785 kb on + strand, within Dsui_0776at 779.794 kb on - strandat 779.848 kb on - strand, within Dsui_0776at 779.950 kb on + strand, within Dsui_0776at 779.999 kb on + strand, within Dsui_0776at 780.016 kb on + strandat 780.018 kb on - strand, within Dsui_0776at 780.173 kb on - strandat 780.174 kb on + strand, within Dsui_0776at 780.254 kb on + strand, within Dsui_0776at 780.286 kb on + strand, within Dsui_0776at 780.291 kb on + strand, within Dsui_0776at 780.322 kb on - strand, within Dsui_0776at 780.330 kb on + strand, within Dsui_0776at 780.335 kb on + strand, within Dsui_0776at 780.456 kb on - strand, within Dsui_0776at 780.456 kb on - strand, within Dsui_0776at 780.456 kb on - strand, within Dsui_0776at 780.483 kb on - strand, within Dsui_0776at 780.533 kb on - strandat 780.533 kb on - strandat 780.533 kb on - strand, within Dsui_0776at 780.533 kb on - strand, within Dsui_0776at 780.563 kb on - strand, within Dsui_0776at 780.592 kb on + strand, within Dsui_0776at 780.685 kb on + strand, within Dsui_0776at 780.685 kb on + strand, within Dsui_0776at 780.685 kb on + strandat 780.715 kb on + strandat 780.738 kb on - strand, within Dsui_0776at 780.786 kb on - strand, within Dsui_0776at 780.857 kb on + strandat 780.872 kb on - strand, within Dsui_0776at 780.874 kb on + strand, within Dsui_0776at 780.882 kb on - strand, within Dsui_0776at 781.002 kb on - strand, within Dsui_0776at 781.034 kb on + strand, within Dsui_0776at 781.037 kb on - strand, within Dsui_0776at 781.200 kb on + strandat 781.213 kb on - strandat 781.239 kb on - strandat 781.365 kb on - strandat 781.418 kb on - strandat 781.469 kb on - strandat 781.498 kb on - strandat 781.498 kb on - strandat 781.502 kb on + strandat 781.516 kb on - strandat 781.544 kb on - strandat 781.544 kb on - strandat 781.559 kb on + strandat 781.574 kb on + strandat 781.680 kb on + strandat 781.680 kb on + strandat 781.743 kb on + strand, within Dsui_0777at 781.771 kb on + strand, within Dsui_0777at 781.782 kb on + strand, within Dsui_0777at 781.782 kb on + strand, within Dsui_0777at 781.782 kb on + strand, within Dsui_0777at 781.784 kb on - strand, within Dsui_0777at 781.790 kb on - strand, within Dsui_0777at 781.794 kb on + strand, within Dsui_0777at 781.806 kb on + strand, within Dsui_0777at 781.881 kb on + strand, within Dsui_0777at 781.908 kb on + strand, within Dsui_0777at 782.031 kb on + strand, within Dsui_0777at 782.082 kb on - strand, within Dsui_0777at 782.205 kb on - strandat 782.300 kb on - strand, within Dsui_0777at 782.325 kb on + strand, within Dsui_0777at 782.347 kb on + strand, within Dsui_0777at 782.362 kb on - strand, within Dsui_0777at 782.447 kb on + strand, within Dsui_0777at 782.447 kb on + strand, within Dsui_0777at 782.448 kb on + strand, within Dsui_0777at 782.496 kb on - strand, within Dsui_0777

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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776,656 + Dsui_0775 0.22 -0.7
776,692 - Dsui_0775 0.25 -3.6
776,692 - Dsui_0775 0.25 -1.2
776,736 - Dsui_0775 0.28 -1.2
776,741 - Dsui_0775 0.29 +0.4
776,743 + Dsui_0775 0.29 +1.1
776,778 + Dsui_0775 0.32 +0.5
776,815 + Dsui_0775 0.35 -0.4
776,886 - Dsui_0775 0.41 -2.6
776,888 + Dsui_0775 0.41 +0.3
776,895 + Dsui_0775 0.42 +1.3
777,001 + Dsui_0775 0.51 -0.4
777,024 + Dsui_0775 0.53 -0.4
777,024 + Dsui_0775 0.53 +0.8
777,098 - Dsui_0775 0.59 +0.4
777,105 + Dsui_0775 0.59 -0.5
777,111 + Dsui_0775 0.60 +0.0
777,111 + Dsui_0775 0.60 +0.0
777,111 + Dsui_0775 0.60 +1.2
777,142 - Dsui_0775 0.62 -0.0
777,142 - Dsui_0775 0.62 -3.1
777,163 - Dsui_0775 0.64 +0.4
777,168 - Dsui_0775 0.65 -0.6
777,224 - +0.4
777,278 + Dsui_0775 0.74 -0.3
777,283 + Dsui_0775 0.74 -0.8
777,291 - +1.4
777,291 - Dsui_0775 0.75 -1.6
777,330 + Dsui_0775 0.78 +0.2
777,354 + Dsui_0775 0.80 -0.2
777,356 - Dsui_0775 0.80 -1.6
777,362 - Dsui_0775 0.81 +0.4
777,372 - Dsui_0775 0.82 -1.6
777,379 + Dsui_0775 0.82 -0.1
777,379 + Dsui_0775 0.82 -0.2
777,405 + +0.8
777,474 + +0.2
777,534 + -0.3
777,547 + -0.2
777,547 - -0.9
777,552 - -0.6
777,561 + -0.1
777,624 + +0.1
777,649 + +0.7
777,654 + +0.1
777,666 - -0.6
777,711 + -0.5
777,750 - +0.4
777,760 - +0.4
777,777 + -0.0
777,777 + -0.5
777,777 + -0.4
777,785 - -1.9
777,822 + +0.3
777,844 + +0.1
777,854 + -0.5
777,855 + -0.9
777,862 - +0.1
777,901 + -0.6
777,925 + -1.9
777,933 - +0.4
777,996 - -2.4
778,049 + Dsui_0776 0.10 +0.4
778,072 + Dsui_0776 0.11 -0.4
778,100 - +0.4
778,170 - Dsui_0776 0.13 -0.8
778,190 - Dsui_0776 0.14 -1.9
778,200 + Dsui_0776 0.14 -0.2
778,200 + Dsui_0776 0.14 +0.4
778,205 + Dsui_0776 0.14 -0.6
778,217 + Dsui_0776 0.15 -0.6
778,218 - +0.4
778,225 - Dsui_0776 0.15 +0.4
778,242 - Dsui_0776 0.15 -1.6
778,257 - Dsui_0776 0.16 -2.9
778,257 - Dsui_0776 0.16 +1.0
778,281 + Dsui_0776 0.16 -1.2
778,300 + Dsui_0776 0.17 +2.1
778,300 + +1.4
778,308 - Dsui_0776 0.17 -1.9
778,374 + Dsui_0776 0.19 -1.4
778,550 - Dsui_0776 0.23 -2.2
778,567 + +0.4
778,698 - Dsui_0776 0.27 -0.2
778,701 + Dsui_0776 0.27 +0.4
778,772 - Dsui_0776 0.29 +0.4
778,814 - Dsui_0776 0.30 -2.6
778,890 + Dsui_0776 0.32 -1.2
778,924 + Dsui_0776 0.33 -2.8
778,924 + Dsui_0776 0.33 -1.4
778,924 + Dsui_0776 0.33 -2.2
778,932 - +0.4
779,041 + +0.4
779,073 - +0.4
779,171 - Dsui_0776 0.39 +0.4
779,240 + Dsui_0776 0.41 +0.4
779,243 - -1.2
779,262 - Dsui_0776 0.41 -2.2
779,290 - +0.4
779,301 + Dsui_0776 0.42 -1.6
779,359 - Dsui_0776 0.44 -1.2
779,445 + Dsui_0776 0.46 -1.2
779,544 + Dsui_0776 0.48 -1.8
779,582 + Dsui_0776 0.49 -0.4
779,634 - Dsui_0776 0.51 +0.4
779,641 + Dsui_0776 0.51 +1.4
779,670 - Dsui_0776 0.52 -0.6
779,727 - Dsui_0776 0.53 -1.2
779,753 + Dsui_0776 0.54 -0.6
779,785 + Dsui_0776 0.55 -1.6
779,794 - +0.4
779,848 - Dsui_0776 0.56 -1.9
779,950 + Dsui_0776 0.59 -2.2
779,999 + Dsui_0776 0.60 -3.3
780,016 + -0.6
780,018 - Dsui_0776 0.61 -1.2
780,173 - +0.4
780,174 + Dsui_0776 0.64 -1.6
780,254 + Dsui_0776 0.67 -1.2
780,286 + Dsui_0776 0.67 -2.2
780,291 + Dsui_0776 0.67 +0.4
780,322 - Dsui_0776 0.68 -1.2
780,330 + Dsui_0776 0.68 -1.2
780,335 + Dsui_0776 0.69 -1.2
780,456 - Dsui_0776 0.72 -0.6
780,456 - Dsui_0776 0.72 -0.6
780,456 - Dsui_0776 0.72 -0.6
780,483 - Dsui_0776 0.72 -0.6
780,533 - +0.4
780,533 - -1.2
780,533 - Dsui_0776 0.74 +0.4
780,533 - Dsui_0776 0.74 -1.2
780,563 - Dsui_0776 0.74 -0.6
780,592 + Dsui_0776 0.75 -0.6
780,685 + Dsui_0776 0.78 -1.2
780,685 + Dsui_0776 0.78 -2.4
780,685 + +0.4
780,715 + -0.6
780,738 - Dsui_0776 0.79 +0.4
780,786 - Dsui_0776 0.80 -1.2
780,857 + +0.4
780,872 - Dsui_0776 0.82 +0.4
780,874 + Dsui_0776 0.82 -1.6
780,882 - Dsui_0776 0.83 +0.4
781,002 - Dsui_0776 0.86 -0.6
781,034 + Dsui_0776 0.86 -0.7
781,037 - Dsui_0776 0.87 -0.6
781,200 + -0.8
781,213 - -1.6
781,239 - -1.2
781,365 - -1.6
781,418 - -2.2
781,469 - -0.6
781,498 - -0.6
781,498 - +0.4
781,502 + +1.1
781,516 - -1.2
781,544 - +0.4
781,544 - -1.2
781,559 + +0.4
781,574 + -0.6
781,680 + -0.6
781,680 + -0.0
781,743 + Dsui_0777 0.14 +1.0
781,771 + Dsui_0777 0.17 -0.2
781,782 + Dsui_0777 0.18 -0.6
781,782 + Dsui_0777 0.18 +0.2
781,782 + Dsui_0777 0.18 +0.4
781,784 - Dsui_0777 0.18 -2.2
781,790 - Dsui_0777 0.18 -2.6
781,794 + Dsui_0777 0.19 +0.4
781,806 + Dsui_0777 0.20 -0.2
781,881 + Dsui_0777 0.26 -1.2
781,908 + Dsui_0777 0.28 -1.6
782,031 + Dsui_0777 0.39 -1.6
782,082 - Dsui_0777 0.43 +0.4
782,205 - -1.2
782,300 - Dsui_0777 0.62 -1.6
782,325 + Dsui_0777 0.64 -1.4
782,347 + Dsui_0777 0.66 -0.2
782,362 - Dsui_0777 0.67 -2.4
782,447 + Dsui_0777 0.75 +0.9
782,447 + Dsui_0777 0.75 -0.6
782,448 + Dsui_0777 0.75 +0.4
782,496 - Dsui_0777 0.79 -2.2

Or see this region's nucleotide sequence