Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0591 and Dsui_0592 are separated by 155 nucleotides Dsui_0592 and Dsui_0593 are separated by 48 nucleotides Dsui_0593 and Dsui_0594 overlap by 8 nucleotides
Dsui_0591: Dsui_0591 - deoxyribodipyrimidine photolyase, at 588,048 to 589,496
_0591
Dsui_0592: Dsui_0592 - putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon, at 589,652 to 591,292
_0592
Dsui_0593: Dsui_0593 - putative transcriptional regulator, at 591,341 to 591,901
_0593
Dsui_0594: Dsui_0594 - RNAse H-fold protein YqgF, at 591,894 to 592,370
_0594
Position (kb) 589
590
591
592 Strain fitness (log2 ratio) -2
-1
0
1 at 588.675 kb on - strand, within Dsui_0591 at 588.764 kb on + strand, within Dsui_0591 at 588.764 kb on + strand, within Dsui_0591 at 588.764 kb on + strand, within Dsui_0591 at 588.794 kb on - strand, within Dsui_0591 at 588.892 kb on + strand at 588.892 kb on + strand at 589.053 kb on + strand at 589.118 kb on + strand, within Dsui_0591 at 589.290 kb on + strand, within Dsui_0591 at 589.516 kb on - strand at 589.530 kb on - strand at 589.565 kb on + strand at 589.565 kb on + strand at 589.588 kb on + strand at 589.629 kb on + strand at 589.629 kb on + strand at 589.637 kb on - strand at 589.637 kb on - strand at 589.692 kb on + strand at 589.700 kb on - strand at 589.700 kb on - strand at 589.751 kb on - strand at 589.751 kb on - strand at 589.815 kb on + strand at 589.888 kb on + strand, within Dsui_0592 at 590.046 kb on + strand, within Dsui_0592 at 590.048 kb on - strand, within Dsui_0592 at 590.060 kb on - strand, within Dsui_0592 at 590.191 kb on - strand, within Dsui_0592 at 590.195 kb on - strand at 590.661 kb on + strand, within Dsui_0592 at 590.669 kb on - strand, within Dsui_0592 at 590.845 kb on + strand, within Dsui_0592 at 591.026 kb on + strand, within Dsui_0592 at 591.130 kb on - strand at 591.161 kb on + strand at 591.161 kb on - strand at 591.169 kb on - strand at 591.204 kb on - strand at 591.236 kb on - strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.338 kb on + strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.346 kb on - strand at 591.348 kb on + strand at 591.466 kb on + strand, within Dsui_0593 at 591.586 kb on - strand, within Dsui_0593 at 591.647 kb on + strand, within Dsui_0593 at 591.721 kb on + strand, within Dsui_0593 at 591.724 kb on - strand, within Dsui_0593 at 591.895 kb on + strand at 591.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 588,675 - Dsui_0591 0.43 -0.3 588,764 + Dsui_0591 0.49 +0.3 588,764 + Dsui_0591 0.49 +0.3 588,764 + Dsui_0591 0.49 -1.7 588,794 - Dsui_0591 0.51 +0.1 588,892 + +0.3 588,892 + +0.3 589,053 + +0.3 589,118 + Dsui_0591 0.74 -1.7 589,290 + Dsui_0591 0.86 -0.7 589,516 - +0.0 589,530 - -0.5 589,565 + -0.2 589,565 + -0.0 589,588 + -0.6 589,629 + -0.1 589,629 + +0.1 589,637 - -1.3 589,637 - -1.7 589,692 + -0.2 589,700 - -0.7 589,700 - +0.3 589,751 - -0.7 589,751 - -0.7 589,815 + -0.7 589,888 + Dsui_0592 0.14 -0.2 590,046 + Dsui_0592 0.24 -1.7 590,048 - Dsui_0592 0.24 -2.1 590,060 - Dsui_0592 0.25 +0.3 590,191 - Dsui_0592 0.33 -1.3 590,195 - +0.3 590,661 + Dsui_0592 0.61 +0.3 590,669 - Dsui_0592 0.62 -0.7 590,845 + Dsui_0592 0.73 +0.3 591,026 + Dsui_0592 0.84 +0.3 591,130 - -2.3 591,161 + -0.7 591,161 - -1.3 591,169 - +0.3 591,204 - -0.7 591,236 - -2.3 591,338 + -0.0 591,338 + +0.4 591,338 + -0.1 591,338 + +0.1 591,338 + +0.3 591,338 + -0.1 591,346 - +0.3 591,346 - -0.7 591,346 - -0.7 591,346 - +0.3 591,346 - -2.1 591,346 - +0.3 591,346 - +0.3 591,346 - -1.3 591,346 - -0.7 591,348 + +0.0 591,466 + Dsui_0593 0.22 +0.1 591,586 - Dsui_0593 0.44 +0.3 591,647 + Dsui_0593 0.55 -0.2 591,721 + Dsui_0593 0.68 +0.0 591,724 - Dsui_0593 0.68 +0.3 591,895 + -0.7 591,896 + -0.0
Or see this region's nucleotide sequence