Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0579 and Dsui_0580 are separated by 110 nucleotides Dsui_0580 and Dsui_0581 are separated by 7 nucleotides Dsui_0581 and Dsui_0582 are separated by 74 nucleotides
Dsui_0579: Dsui_0579 - putative permease, at 576,846 to 577,721
_0579
Dsui_0580: Dsui_0580 - ATP-dependent protease HslVU, ATPase subunit, at 577,832 to 579,169
_0580
Dsui_0581: Dsui_0581 - ATP-dependent protease HslVU, peptidase subunit, at 579,177 to 579,713
_0581
Dsui_0582: Dsui_0582 - anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 579,788 to 581,017
_0582
Position (kb) 577
578
579
580 Strain fitness (log2 ratio) -2
-1
0
1 at 576.906 kb on - strand at 576.927 kb on + strand at 576.999 kb on + strand, within Dsui_0579 at 577.006 kb on + strand, within Dsui_0579 at 577.194 kb on + strand, within Dsui_0579 at 577.194 kb on + strand, within Dsui_0579 at 577.315 kb on - strand, within Dsui_0579 at 577.342 kb on - strand, within Dsui_0579 at 577.360 kb on - strand, within Dsui_0579 at 577.373 kb on - strand, within Dsui_0579 at 577.457 kb on - strand, within Dsui_0579 at 577.482 kb on - strand, within Dsui_0579 at 577.732 kb on + strand at 577.758 kb on - strand at 577.891 kb on + strand at 577.974 kb on + strand, within Dsui_0580 at 577.979 kb on - strand, within Dsui_0580 at 578.012 kb on - strand, within Dsui_0580 at 578.022 kb on - strand, within Dsui_0580 at 578.090 kb on - strand, within Dsui_0580 at 578.107 kb on - strand, within Dsui_0580 at 578.157 kb on + strand, within Dsui_0580 at 578.212 kb on + strand, within Dsui_0580 at 578.437 kb on - strand, within Dsui_0580 at 578.769 kb on - strand, within Dsui_0580 at 578.890 kb on + strand, within Dsui_0580 at 578.900 kb on + strand, within Dsui_0580 at 579.053 kb on - strand at 579.102 kb on + strand at 579.279 kb on - strand, within Dsui_0581 at 579.519 kb on - strand, within Dsui_0581 at 579.538 kb on - strand, within Dsui_0581 at 579.580 kb on + strand, within Dsui_0581 at 579.598 kb on - strand, within Dsui_0581 at 579.640 kb on - strand, within Dsui_0581 at 579.686 kb on + strand at 579.707 kb on + strand at 580.134 kb on - strand, within Dsui_0582 at 580.168 kb on - strand, within Dsui_0582
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 576,906 - +0.3 576,927 + +0.3 576,999 + Dsui_0579 0.17 +0.3 577,006 + Dsui_0579 0.18 -1.3 577,194 + Dsui_0579 0.40 -1.3 577,194 + Dsui_0579 0.40 -2.1 577,315 - Dsui_0579 0.54 -0.4 577,342 - Dsui_0579 0.57 +0.2 577,360 - Dsui_0579 0.59 +0.4 577,373 - Dsui_0579 0.60 -0.2 577,457 - Dsui_0579 0.70 +0.6 577,482 - Dsui_0579 0.73 -0.0 577,732 + -0.7 577,758 - -0.2 577,891 + -1.7 577,974 + Dsui_0580 0.11 -1.3 577,979 - Dsui_0580 0.11 +0.4 578,012 - Dsui_0580 0.13 +0.0 578,022 - Dsui_0580 0.14 -0.3 578,090 - Dsui_0580 0.19 +1.0 578,107 - Dsui_0580 0.21 -0.1 578,157 + Dsui_0580 0.24 +0.3 578,212 + Dsui_0580 0.28 -1.3 578,437 - Dsui_0580 0.45 -0.1 578,769 - Dsui_0580 0.70 +0.0 578,890 + Dsui_0580 0.79 -1.7 578,900 + Dsui_0580 0.80 +0.3 579,053 - +0.1 579,102 + -0.7 579,279 - Dsui_0581 0.19 -0.1 579,519 - Dsui_0581 0.64 -0.3 579,538 - Dsui_0581 0.67 +0.1 579,580 + Dsui_0581 0.75 -1.3 579,598 - Dsui_0581 0.78 -0.1 579,640 - Dsui_0581 0.86 -0.3 579,686 + -1.3 579,707 + +0.3 580,134 - Dsui_0582 0.28 +0.2 580,168 - Dsui_0582 0.31 +0.3
Or see this region's nucleotide sequence