Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0430 and Dsui_0431 are separated by 12 nucleotides Dsui_0431 and Dsui_0432 are separated by 57 nucleotides Dsui_0432 and Dsui_0433 are separated by 93 nucleotides
Dsui_0430: Dsui_0430 - ABC-type branched-chain amino acid transport system, periplasmic component, at 436,104 to 437,216
_0430
Dsui_0431: Dsui_0431 - putative permease, DMT superfamily, at 437,229 to 438,065
_0431
Dsui_0432: Dsui_0432 - hypothetical protein, at 438,123 to 439,199
_0432
Dsui_0433: Dsui_0433 - collagenase-like protease, at 439,293 to 440,606
_0433
Position (kb) 438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 437.164 kb on - strand at 437.217 kb on + strand at 437.220 kb on - strand at 437.225 kb on - strand at 437.225 kb on - strand at 437.415 kb on - strand, within Dsui_0431 at 437.417 kb on - strand, within Dsui_0431 at 437.422 kb on - strand, within Dsui_0431 at 437.455 kb on + strand, within Dsui_0431 at 437.455 kb on + strand, within Dsui_0431 at 437.598 kb on - strand, within Dsui_0431 at 437.611 kb on + strand, within Dsui_0431 at 437.635 kb on - strand, within Dsui_0431 at 437.637 kb on + strand, within Dsui_0431 at 437.645 kb on - strand, within Dsui_0431 at 437.702 kb on + strand, within Dsui_0431 at 437.744 kb on + strand at 437.852 kb on - strand, within Dsui_0431 at 437.856 kb on - strand, within Dsui_0431 at 437.859 kb on + strand at 437.890 kb on - strand, within Dsui_0431 at 437.932 kb on - strand at 437.948 kb on + strand, within Dsui_0431 at 437.971 kb on - strand, within Dsui_0431 at 438.026 kb on - strand at 438.044 kb on - strand at 438.060 kb on + strand at 438.260 kb on - strand, within Dsui_0432 at 438.331 kb on + strand, within Dsui_0432 at 438.390 kb on + strand at 438.506 kb on - strand, within Dsui_0432 at 439.022 kb on + strand, within Dsui_0432 at 439.157 kb on + strand at 439.203 kb on - strand at 439.233 kb on + strand at 439.242 kb on + strand at 439.299 kb on - strand at 439.540 kb on - strand, within Dsui_0433 at 439.784 kb on - strand, within Dsui_0433 at 439.814 kb on + strand, within Dsui_0433 at 439.950 kb on - strand at 439.996 kb on - strand, within Dsui_0433 at 440.076 kb on - strand, within Dsui_0433 at 440.134 kb on - strand, within Dsui_0433
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 437,164 - +0.2 437,217 + -1.1 437,220 - -2.1 437,225 - -1.8 437,225 - +0.2 437,415 - Dsui_0431 0.22 +0.2 437,417 - Dsui_0431 0.22 -3.1 437,422 - Dsui_0431 0.23 -2.1 437,455 + Dsui_0431 0.27 -1.8 437,455 + Dsui_0431 0.27 -0.8 437,598 - Dsui_0431 0.44 -1.3 437,611 + Dsui_0431 0.46 +0.2 437,635 - Dsui_0431 0.49 -3.7 437,637 + Dsui_0431 0.49 -3.8 437,645 - Dsui_0431 0.50 -2.6 437,702 + Dsui_0431 0.57 +0.2 437,744 + -1.3 437,852 - Dsui_0431 0.74 +0.2 437,856 - Dsui_0431 0.75 -1.3 437,859 + +0.2 437,890 - Dsui_0431 0.79 +0.2 437,932 - +0.2 437,948 + Dsui_0431 0.86 -1.3 437,971 - Dsui_0431 0.89 -2.1 438,026 - -2.6 438,044 - -1.8 438,060 + -0.8 438,260 - Dsui_0432 0.13 -0.8 438,331 + Dsui_0432 0.19 +0.2 438,390 + +0.2 438,506 - Dsui_0432 0.36 -1.0 439,022 + Dsui_0432 0.83 -2.6 439,157 + -0.8 439,203 - -0.1 439,233 + +0.2 439,242 + +0.2 439,299 - -0.1 439,540 - Dsui_0433 0.19 -0.8 439,784 - Dsui_0433 0.37 -1.5 439,814 + Dsui_0433 0.40 +0.2 439,950 - +0.2 439,996 - Dsui_0433 0.54 -1.6 440,076 - Dsui_0433 0.60 -0.3 440,134 - Dsui_0433 0.64 -0.8
Or see this region's nucleotide sequence