Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0405 and Dsui_0406 are separated by 9 nucleotides Dsui_0406 and Dsui_0407 are separated by 9 nucleotides Dsui_0407 and Dsui_0408 are separated by 65 nucleotides
Dsui_0405: Dsui_0405 - type I secretion outer membrane protein, TolC family, at 403,832 to 405,175
_0405
Dsui_0406: Dsui_0406 - Rhodanese-related sulfurtransferase, at 405,185 to 405,508
_0406
Dsui_0407: Dsui_0407 - protein-L-isoaspartate carboxylmethyltransferase, at 405,518 to 406,183
_0407
Dsui_0408: Dsui_0408 - cation/multidrug efflux pump, at 406,249 to 409,452
_0408
Position (kb)
405
406
407 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 404.603 kb on - strand, within Dsui_0405 at 404.623 kb on - strand, within Dsui_0405 at 404.692 kb on - strand, within Dsui_0405 at 404.702 kb on + strand, within Dsui_0405 at 404.759 kb on - strand, within Dsui_0405 at 404.787 kb on - strand, within Dsui_0405 at 404.820 kb on + strand, within Dsui_0405 at 404.864 kb on + strand at 404.875 kb on + strand, within Dsui_0405 at 404.909 kb on - strand, within Dsui_0405 at 404.914 kb on - strand, within Dsui_0405 at 404.959 kb on - strand, within Dsui_0405 at 404.968 kb on - strand, within Dsui_0405 at 404.979 kb on + strand, within Dsui_0405 at 405.003 kb on - strand, within Dsui_0405 at 405.045 kb on - strand at 405.141 kb on + strand at 405.181 kb on + strand at 405.189 kb on - strand at 405.189 kb on - strand at 405.191 kb on - strand at 405.286 kb on - strand, within Dsui_0406 at 405.359 kb on + strand, within Dsui_0406 at 405.367 kb on - strand, within Dsui_0406 at 405.683 kb on - strand, within Dsui_0407 at 406.345 kb on + strand at 406.394 kb on - strand at 406.451 kb on - strand at 406.498 kb on + strand at 406.571 kb on - strand, within Dsui_0408 at 406.613 kb on - strand, within Dsui_0408 at 406.713 kb on + strand, within Dsui_0408 at 406.799 kb on + strand, within Dsui_0408 at 406.812 kb on + strand, within Dsui_0408 at 406.838 kb on + strand, within Dsui_0408 at 406.844 kb on - strand, within Dsui_0408 at 406.846 kb on - strand, within Dsui_0408 at 406.856 kb on - strand, within Dsui_0408 at 406.872 kb on + strand at 406.907 kb on - strand, within Dsui_0408 at 406.946 kb on - strand, within Dsui_0408 at 406.980 kb on + strand, within Dsui_0408 at 407.103 kb on - strand, within Dsui_0408 at 407.151 kb on - strand, within Dsui_0408 at 407.162 kb on + strand at 407.180 kb on - strand, within Dsui_0408 at 407.180 kb on - strand, within Dsui_0408
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 404,603 - Dsui_0405 0.57 -0.5 404,623 - Dsui_0405 0.59 +0.4 404,692 - Dsui_0405 0.64 +0.4 404,702 + Dsui_0405 0.65 -0.7 404,759 - Dsui_0405 0.69 -0.2 404,787 - Dsui_0405 0.71 +0.3 404,820 + Dsui_0405 0.74 +0.3 404,864 + +0.3 404,875 + Dsui_0405 0.78 -1.3 404,909 - Dsui_0405 0.80 +0.4 404,914 - Dsui_0405 0.81 +0.4 404,959 - Dsui_0405 0.84 +0.2 404,968 - Dsui_0405 0.85 -0.5 404,979 + Dsui_0405 0.85 +0.3 405,003 - Dsui_0405 0.87 +0.1 405,045 - +0.3 405,141 + -0.7 405,181 + -0.1 405,189 - +0.1 405,189 - -0.1 405,191 - +0.1 405,286 - Dsui_0406 0.31 +0.3 405,359 + Dsui_0406 0.54 -2.3 405,367 - Dsui_0406 0.56 +0.2 405,683 - Dsui_0407 0.25 -2.7 406,345 + +0.3 406,394 - +0.2 406,451 - -0.1 406,498 + +0.3 406,571 - Dsui_0408 0.10 -0.2 406,613 - Dsui_0408 0.11 +0.1 406,713 + Dsui_0408 0.14 +0.3 406,799 + Dsui_0408 0.17 -2.7 406,812 + Dsui_0408 0.18 -1.7 406,838 + Dsui_0408 0.18 -2.1 406,844 - Dsui_0408 0.19 +0.3 406,846 - Dsui_0408 0.19 -0.3 406,856 - Dsui_0408 0.19 +0.0 406,872 + +0.3 406,907 - Dsui_0408 0.21 +0.1 406,946 - Dsui_0408 0.22 +0.2 406,980 + Dsui_0408 0.23 -3.1 407,103 - Dsui_0408 0.27 +0.1 407,151 - Dsui_0408 0.28 +0.8 407,162 + +0.3 407,180 - Dsui_0408 0.29 -0.2 407,180 - Dsui_0408 0.29 -0.2
Or see this region's nucleotide sequence