Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0262 and Dsui_0263 overlap by 4 nucleotides Dsui_0263 and Dsui_0264 are separated by 118 nucleotides Dsui_0264 and Dsui_0265 are separated by 74 nucleotides
Dsui_0262: Dsui_0262 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 259,881 to 262,799
_0262
Dsui_0263: Dsui_0263 - cytochrome c peroxidase, at 262,796 to 263,830
_0263
Dsui_0264: Dsui_0264 - tRNA-Phe, at 263,949 to 264,024
_0264
Dsui_0265: Dsui_0265 - signal transduction histidine kinase, at 264,099 to 265,634
_0265
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 261.885 kb on + strand, within Dsui_0262 at 261.891 kb on + strand, within Dsui_0262 at 261.919 kb on - strand, within Dsui_0262 at 261.943 kb on - strand, within Dsui_0262 at 261.945 kb on - strand, within Dsui_0262 at 261.988 kb on - strand, within Dsui_0262 at 262.105 kb on - strand, within Dsui_0262 at 262.110 kb on + strand, within Dsui_0262 at 262.142 kb on + strand, within Dsui_0262 at 262.234 kb on + strand, within Dsui_0262 at 262.242 kb on - strand, within Dsui_0262 at 262.384 kb on + strand, within Dsui_0262 at 262.438 kb on + strand, within Dsui_0262 at 262.466 kb on - strand, within Dsui_0262 at 262.501 kb on - strand, within Dsui_0262 at 262.543 kb on + strand at 262.625 kb on + strand at 262.671 kb on + strand at 262.672 kb on + strand at 262.678 kb on + strand at 262.686 kb on - strand at 262.696 kb on - strand at 262.754 kb on - strand at 262.794 kb on + strand at 262.825 kb on + strand at 262.975 kb on - strand, within Dsui_0263 at 262.975 kb on - strand, within Dsui_0263 at 263.090 kb on - strand, within Dsui_0263 at 263.250 kb on + strand, within Dsui_0263 at 263.256 kb on + strand at 263.339 kb on - strand, within Dsui_0263 at 263.388 kb on + strand, within Dsui_0263 at 263.396 kb on - strand, within Dsui_0263 at 263.451 kb on + strand, within Dsui_0263 at 263.523 kb on + strand at 263.566 kb on - strand, within Dsui_0263 at 263.665 kb on + strand, within Dsui_0263 at 263.702 kb on + strand at 263.784 kb on - strand at 263.786 kb on - strand at 263.827 kb on + strand at 263.835 kb on - strand at 263.927 kb on - strand at 264.072 kb on - strand at 264.072 kb on - strand at 264.104 kb on - strand at 264.119 kb on + strand at 264.154 kb on + strand at 264.164 kb on + strand at 264.164 kb on + strand at 264.176 kb on + strand at 264.243 kb on + strand at 264.243 kb on + strand at 264.252 kb on - strand at 264.355 kb on - strand, within Dsui_0265 at 264.364 kb on - strand, within Dsui_0265 at 264.445 kb on - strand, within Dsui_0265 at 264.466 kb on + strand, within Dsui_0265 at 264.520 kb on - strand, within Dsui_0265 at 264.554 kb on + strand, within Dsui_0265 at 264.679 kb on + strand, within Dsui_0265 at 264.718 kb on + strand, within Dsui_0265 at 264.764 kb on + strand, within Dsui_0265 at 264.813 kb on + strand, within Dsui_0265
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 261,885 + Dsui_0262 0.69 -0.7 261,891 + Dsui_0262 0.69 +0.3 261,919 - Dsui_0262 0.70 +0.5 261,943 - Dsui_0262 0.71 -0.4 261,945 - Dsui_0262 0.71 +0.1 261,988 - Dsui_0262 0.72 +0.1 262,105 - Dsui_0262 0.76 -0.3 262,110 + Dsui_0262 0.76 +0.3 262,142 + Dsui_0262 0.77 -1.2 262,234 + Dsui_0262 0.81 -1.7 262,242 - Dsui_0262 0.81 -0.2 262,384 + Dsui_0262 0.86 -1.2 262,438 + Dsui_0262 0.88 +0.3 262,466 - Dsui_0262 0.89 +0.3 262,501 - Dsui_0262 0.90 -0.1 262,543 + -0.7 262,625 + -0.7 262,671 + -2.7 262,672 + -1.2 262,678 + +0.3 262,686 - -0.1 262,696 - -0.5 262,754 - -0.9 262,794 + -1.2 262,825 + +0.3 262,975 - Dsui_0263 0.17 +0.3 262,975 - Dsui_0263 0.17 -0.2 263,090 - Dsui_0263 0.28 +0.5 263,250 + Dsui_0263 0.44 +0.3 263,256 + -0.7 263,339 - Dsui_0263 0.52 -0.2 263,388 + Dsui_0263 0.57 -0.7 263,396 - Dsui_0263 0.58 -0.4 263,451 + Dsui_0263 0.63 -1.2 263,523 + +0.3 263,566 - Dsui_0263 0.74 +0.3 263,665 + Dsui_0263 0.84 -1.2 263,702 + +0.3 263,784 - -0.1 263,786 - +0.1 263,827 + -1.2 263,835 - -0.2 263,927 - +0.2 264,072 - +0.3 264,072 - -0.7 264,104 - -0.7 264,119 + -2.5 264,154 + -0.7 264,164 + +0.3 264,164 + -2.0 264,176 + -0.7 264,243 + -3.2 264,243 + -0.7 264,252 - -1.2 264,355 - Dsui_0265 0.17 -2.5 264,364 - Dsui_0265 0.17 -1.2 264,445 - Dsui_0265 0.23 +0.3 264,466 + Dsui_0265 0.24 +0.3 264,520 - Dsui_0265 0.27 -0.7 264,554 + Dsui_0265 0.30 +0.3 264,679 + Dsui_0265 0.38 -1.7 264,718 + Dsui_0265 0.40 -0.7 264,764 + Dsui_0265 0.43 +0.3 264,813 + Dsui_0265 0.46 +0.3
Or see this region's nucleotide sequence