Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0198 and Dsui_0199 overlap by 4 nucleotides Dsui_0199 and Dsui_0200 overlap by 4 nucleotides Dsui_0200 and Dsui_0201 are separated by 55 nucleotides Dsui_0201 and Dsui_0202 are separated by 3 nucleotides Dsui_0202 and Dsui_0203 are separated by 14 nucleotides Dsui_0203 and Dsui_0204 are separated by 1 nucleotides
Dsui_0198: Dsui_0198 - phage conserved hypothetical protein, phiE125 gp8 family, at 199,487 to 200,035
_0198
Dsui_0199: Dsui_0199 - Bacteriophage protein of unknown function (DUF646), at 200,032 to 200,517
_0199
Dsui_0200: Dsui_0200 - hypothetical protein, at 200,514 to 200,936
_0200
Dsui_0201: Dsui_0201 - hypothetical protein, at 200,992 to 201,759
_0201
Dsui_0202: Dsui_0202 - hypothetical protein, at 201,763 to 202,095
_0202
Dsui_0203: Dsui_0203 - hypothetical protein, at 202,110 to 202,382
_0203
Dsui_0204: Dsui_0204 - hypothetical protein, at 202,384 to 204,846
_0204
Position (kb)
200
201
202 Strain fitness (log2 ratio)
-2
-1
0
1 at 200.070 kb on - strand at 200.121 kb on - strand, within Dsui_0199 at 200.343 kb on + strand, within Dsui_0199 at 200.454 kb on - strand, within Dsui_0199 at 200.454 kb on - strand, within Dsui_0199 at 200.528 kb on + strand at 200.541 kb on + strand at 200.543 kb on + strand at 200.551 kb on + strand at 200.559 kb on - strand, within Dsui_0200 at 200.602 kb on + strand, within Dsui_0200 at 200.613 kb on + strand, within Dsui_0200 at 200.696 kb on + strand, within Dsui_0200 at 200.905 kb on - strand at 200.949 kb on - strand at 200.952 kb on + strand at 200.952 kb on + strand at 200.960 kb on - strand at 200.970 kb on + strand at 200.978 kb on - strand at 200.998 kb on - strand at 201.056 kb on - strand at 201.185 kb on - strand, within Dsui_0201 at 201.195 kb on + strand, within Dsui_0201 at 201.231 kb on - strand, within Dsui_0201 at 201.299 kb on + strand, within Dsui_0201 at 201.322 kb on - strand, within Dsui_0201 at 201.367 kb on - strand, within Dsui_0201 at 201.427 kb on + strand, within Dsui_0201 at 201.510 kb on - strand, within Dsui_0201 at 201.757 kb on - strand at 201.850 kb on - strand, within Dsui_0202 at 201.881 kb on - strand, within Dsui_0202 at 201.881 kb on - strand at 202.083 kb on - strand at 202.122 kb on - strand at 202.137 kb on + strand at 202.156 kb on - strand, within Dsui_0203 at 202.183 kb on - strand, within Dsui_0203 at 202.380 kb on - strand at 202.412 kb on + strand at 202.413 kb on + strand at 202.559 kb on + strand at 202.567 kb on - strand at 202.567 kb on - strand at 202.569 kb on + strand at 202.654 kb on + strand, within Dsui_0204 at 202.659 kb on + strand, within Dsui_0204
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 200,070 - +0.3 200,121 - Dsui_0199 0.18 -0.7 200,343 + Dsui_0199 0.64 +0.3 200,454 - Dsui_0199 0.87 -1.7 200,454 - Dsui_0199 0.87 +0.3 200,528 + +0.3 200,541 + +0.3 200,543 + +0.3 200,551 + +0.3 200,559 - Dsui_0200 0.11 +0.3 200,602 + Dsui_0200 0.21 -0.7 200,613 + Dsui_0200 0.23 -1.7 200,696 + Dsui_0200 0.43 -2.3 200,905 - -0.7 200,949 - -1.3 200,952 + +0.3 200,952 + -1.3 200,960 - -1.3 200,970 + -1.3 200,978 - +0.3 200,998 - +0.3 201,056 - +0.3 201,185 - Dsui_0201 0.25 +0.3 201,195 + Dsui_0201 0.26 -0.7 201,231 - Dsui_0201 0.31 -1.3 201,299 + Dsui_0201 0.40 +0.3 201,322 - Dsui_0201 0.43 +0.3 201,367 - Dsui_0201 0.49 -0.7 201,427 + Dsui_0201 0.57 -0.7 201,510 - Dsui_0201 0.67 +0.3 201,757 - +0.3 201,850 - Dsui_0202 0.26 +0.3 201,881 - Dsui_0202 0.35 +0.3 201,881 - +0.3 202,083 - +0.3 202,122 - +0.3 202,137 + +0.3 202,156 - Dsui_0203 0.17 -1.3 202,183 - Dsui_0203 0.27 -2.0 202,380 - -1.3 202,412 + -0.7 202,413 + -0.7 202,559 + -0.7 202,567 - -1.3 202,567 - -1.3 202,569 + -0.7 202,654 + Dsui_0204 0.11 +0.3 202,659 + Dsui_0204 0.11 -0.7
Or see this region's nucleotide sequence