Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0183 and Dsui_0184 are separated by 187 nucleotides Dsui_0184 and Dsui_0185 are separated by 30 nucleotides Dsui_0185 and Dsui_0186 are separated by 23 nucleotides Dsui_0186 and Dsui_0187 are separated by 16 nucleotides Dsui_0187 and Dsui_0188 are separated by 28 nucleotides
Dsui_0183: Dsui_0183 - SOS response transcriptional repressor, RecA-mediated autopeptidase, at 184,334 to 184,930
_0183
Dsui_0184: Dsui_0184 - putative transcriptional regulator, at 185,118 to 185,351
_0184
Dsui_0185: Dsui_0185 - hypothetical protein, at 185,382 to 185,846
_0185
Dsui_0186: Dsui_0186 - DNA/RNA helicase, superfamily II, SNF2 family, at 185,870 to 188,398
_0186
Dsui_0187: Dsui_0187 - hypothetical protein, at 188,415 to 189,269
_0187
Dsui_0188: Dsui_0188 - hypothetical protein, at 189,298 to 189,816
_0188
Position (kb)
185
186
187
188
189 Strain fitness (log2 ratio)
-2
-1
0
1 at 185.099 kb on - strand at 185.108 kb on - strand at 185.161 kb on - strand, within Dsui_0184 at 185.270 kb on - strand, within Dsui_0184 at 185.397 kb on + strand at 185.510 kb on - strand, within Dsui_0185 at 185.554 kb on - strand, within Dsui_0185 at 185.592 kb on - strand, within Dsui_0185 at 185.665 kb on + strand, within Dsui_0185 at 185.776 kb on + strand, within Dsui_0185 at 185.843 kb on - strand at 185.843 kb on - strand at 185.843 kb on - strand at 185.848 kb on - strand at 185.885 kb on - strand at 185.898 kb on - strand at 185.907 kb on + strand at 185.907 kb on + strand at 186.096 kb on - strand at 186.107 kb on + strand at 186.107 kb on + strand at 186.115 kb on - strand at 186.120 kb on - strand at 186.243 kb on + strand, within Dsui_0186 at 186.325 kb on - strand, within Dsui_0186 at 186.325 kb on - strand, within Dsui_0186 at 186.325 kb on - strand, within Dsui_0186 at 186.410 kb on + strand, within Dsui_0186 at 186.485 kb on + strand, within Dsui_0186 at 186.485 kb on + strand, within Dsui_0186 at 186.630 kb on + strand, within Dsui_0186 at 186.713 kb on + strand, within Dsui_0186 at 186.713 kb on + strand, within Dsui_0186 at 186.828 kb on + strand, within Dsui_0186 at 186.874 kb on + strand, within Dsui_0186 at 186.882 kb on - strand, within Dsui_0186 at 187.050 kb on - strand, within Dsui_0186 at 187.080 kb on - strand, within Dsui_0186 at 187.090 kb on + strand, within Dsui_0186 at 187.103 kb on + strand, within Dsui_0186 at 187.111 kb on - strand, within Dsui_0186 at 187.138 kb on + strand, within Dsui_0186 at 187.138 kb on + strand, within Dsui_0186 at 187.146 kb on - strand, within Dsui_0186 at 187.165 kb on - strand, within Dsui_0186 at 187.249 kb on + strand, within Dsui_0186 at 187.368 kb on - strand, within Dsui_0186 at 187.462 kb on + strand, within Dsui_0186 at 187.506 kb on - strand, within Dsui_0186 at 187.507 kb on + strand, within Dsui_0186 at 187.610 kb on + strand, within Dsui_0186 at 187.710 kb on + strand, within Dsui_0186 at 187.710 kb on + strand, within Dsui_0186 at 187.752 kb on - strand, within Dsui_0186 at 187.757 kb on + strand, within Dsui_0186 at 187.760 kb on - strand, within Dsui_0186 at 187.780 kb on + strand, within Dsui_0186 at 187.788 kb on - strand, within Dsui_0186 at 188.024 kb on - strand, within Dsui_0186 at 188.047 kb on - strand, within Dsui_0186 at 188.149 kb on - strand at 188.294 kb on + strand at 188.391 kb on - strand at 188.410 kb on - strand at 188.421 kb on - strand at 188.463 kb on + strand at 188.463 kb on + strand at 188.481 kb on - strand at 188.673 kb on + strand, within Dsui_0187 at 188.707 kb on - strand, within Dsui_0187 at 188.731 kb on - strand, within Dsui_0187 at 188.859 kb on - strand, within Dsui_0187 at 188.936 kb on - strand, within Dsui_0187 at 188.978 kb on - strand, within Dsui_0187 at 188.986 kb on + strand, within Dsui_0187 at 189.032 kb on - strand, within Dsui_0187 at 189.071 kb on + strand, within Dsui_0187 at 189.114 kb on + strand, within Dsui_0187 at 189.138 kb on - strand, within Dsui_0187 at 189.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 185,099 - -1.7 185,108 - -0.7 185,161 - Dsui_0184 0.18 +0.3 185,270 - Dsui_0184 0.65 -0.7 185,397 + +0.3 185,510 - Dsui_0185 0.28 +0.3 185,554 - Dsui_0185 0.37 -1.7 185,592 - Dsui_0185 0.45 -0.7 185,665 + Dsui_0185 0.61 -0.7 185,776 + Dsui_0185 0.85 +0.3 185,843 - +0.3 185,843 - -1.3 185,843 - +0.3 185,848 - -1.3 185,885 - +0.3 185,898 - +0.3 185,907 + +0.3 185,907 + -1.7 186,096 - -0.7 186,107 + +0.3 186,107 + +0.3 186,115 - -1.3 186,120 - +0.3 186,243 + Dsui_0186 0.15 -0.7 186,325 - Dsui_0186 0.18 +0.3 186,325 - Dsui_0186 0.18 -1.3 186,325 - Dsui_0186 0.18 -1.3 186,410 + Dsui_0186 0.21 +0.3 186,485 + Dsui_0186 0.24 +0.3 186,485 + Dsui_0186 0.24 -2.5 186,630 + Dsui_0186 0.30 +0.3 186,713 + Dsui_0186 0.33 -1.7 186,713 + Dsui_0186 0.33 -0.7 186,828 + Dsui_0186 0.38 -0.7 186,874 + Dsui_0186 0.40 -0.7 186,882 - Dsui_0186 0.40 -1.3 187,050 - Dsui_0186 0.47 -0.7 187,080 - Dsui_0186 0.48 +0.3 187,090 + Dsui_0186 0.48 +0.3 187,103 + Dsui_0186 0.49 -2.3 187,111 - Dsui_0186 0.49 +0.3 187,138 + Dsui_0186 0.50 +0.3 187,138 + Dsui_0186 0.50 +0.3 187,146 - Dsui_0186 0.50 -1.7 187,165 - Dsui_0186 0.51 +0.3 187,249 + Dsui_0186 0.55 -2.0 187,368 - Dsui_0186 0.59 +0.3 187,462 + Dsui_0186 0.63 -0.7 187,506 - Dsui_0186 0.65 +0.3 187,507 + Dsui_0186 0.65 -0.7 187,610 + Dsui_0186 0.69 +0.3 187,710 + Dsui_0186 0.73 -0.7 187,710 + Dsui_0186 0.73 +0.3 187,752 - Dsui_0186 0.74 -1.3 187,757 + Dsui_0186 0.75 +0.3 187,760 - Dsui_0186 0.75 -1.3 187,780 + Dsui_0186 0.76 -0.7 187,788 - Dsui_0186 0.76 +0.3 188,024 - Dsui_0186 0.85 +0.3 188,047 - Dsui_0186 0.86 -0.7 188,149 - -0.7 188,294 + +0.3 188,391 - -0.7 188,410 - -0.7 188,421 - -0.7 188,463 + +0.3 188,463 + +0.3 188,481 - +0.3 188,673 + Dsui_0187 0.30 -2.0 188,707 - Dsui_0187 0.34 +0.3 188,731 - Dsui_0187 0.37 +0.3 188,859 - Dsui_0187 0.52 -0.7 188,936 - Dsui_0187 0.61 -0.7 188,978 - Dsui_0187 0.66 -1.3 188,986 + Dsui_0187 0.67 -1.3 189,032 - Dsui_0187 0.72 +0.3 189,071 + Dsui_0187 0.77 +0.3 189,114 + Dsui_0187 0.82 -1.7 189,138 - Dsui_0187 0.85 -1.3 189,316 + +0.3
Or see this region's nucleotide sequence