Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0092 and Dsui_0093 overlap by 4 nucleotides Dsui_0093 and Dsui_0094 are separated by 122 nucleotides Dsui_0094 and Dsui_0095 are separated by 9 nucleotides
Dsui_0092: Dsui_0092 - phosphoribosylaminoimidazole carboxylase, PurE protein, at 91,139 to 91,639
_0092
Dsui_0093: Dsui_0093 - 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase, at 91,636 to 92,490
_0093
Dsui_0094: Dsui_0094 - 2-oxoacid:ferredoxin oxidoreductase, gamma subunit, at 92,613 to 93,230
_0094
Dsui_0095: Dsui_0095 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 93,240 to 95,105
_0095
Position (kb)
92
93
94 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 92.525 kb on + strand at 92.533 kb on - strand at 92.534 kb on - strand at 92.584 kb on - strand at 92.591 kb on - strand at 92.595 kb on - strand at 92.612 kb on - strand at 92.612 kb on - strand at 92.612 kb on - strand at 92.616 kb on + strand at 92.616 kb on + strand at 92.616 kb on + strand at 92.616 kb on + strand at 92.619 kb on - strand at 92.619 kb on - strand at 92.619 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.653 kb on - strand at 92.720 kb on + strand at 92.770 kb on + strand, within Dsui_0094 at 92.777 kb on + strand, within Dsui_0094 at 92.877 kb on - strand, within Dsui_0094 at 92.908 kb on - strand at 92.908 kb on - strand, within Dsui_0094 at 92.927 kb on + strand, within Dsui_0094 at 92.935 kb on - strand, within Dsui_0094 at 92.935 kb on - strand, within Dsui_0094 at 92.935 kb on - strand, within Dsui_0094 at 92.943 kb on - strand, within Dsui_0094 at 92.994 kb on - strand, within Dsui_0094 at 93.014 kb on + strand at 93.033 kb on + strand at 93.033 kb on + strand, within Dsui_0094 at 93.041 kb on - strand, within Dsui_0094 at 93.042 kb on - strand, within Dsui_0094 at 93.050 kb on + strand, within Dsui_0094 at 93.095 kb on + strand, within Dsui_0094 at 93.127 kb on - strand, within Dsui_0094 at 93.140 kb on - strand, within Dsui_0094 at 93.291 kb on + strand at 93.386 kb on - strand at 93.432 kb on - strand, within Dsui_0095 at 93.475 kb on + strand, within Dsui_0095 at 93.484 kb on + strand, within Dsui_0095 at 93.484 kb on + strand at 93.522 kb on - strand, within Dsui_0095 at 93.544 kb on + strand at 93.553 kb on + strand at 93.553 kb on + strand at 93.561 kb on - strand, within Dsui_0095 at 93.574 kb on + strand, within Dsui_0095 at 93.582 kb on - strand, within Dsui_0095 at 93.582 kb on - strand, within Dsui_0095 at 93.610 kb on - strand, within Dsui_0095 at 93.647 kb on - strand, within Dsui_0095 at 93.704 kb on - strand, within Dsui_0095 at 93.789 kb on - strand, within Dsui_0095 at 93.792 kb on - strand, within Dsui_0095 at 93.798 kb on + strand at 93.798 kb on + strand, within Dsui_0095 at 93.798 kb on + strand, within Dsui_0095 at 93.868 kb on + strand at 93.887 kb on - strand, within Dsui_0095 at 93.906 kb on - strand, within Dsui_0095 at 93.967 kb on - strand, within Dsui_0095 at 93.967 kb on - strand, within Dsui_0095 at 94.010 kb on + strand, within Dsui_0095 at 94.018 kb on - strand, within Dsui_0095 at 94.028 kb on + strand, within Dsui_0095 at 94.051 kb on - strand, within Dsui_0095 at 94.118 kb on + strand, within Dsui_0095 at 94.152 kb on - strand, within Dsui_0095 at 94.227 kb on + strand, within Dsui_0095
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 92,525 + -0.7 92,533 - +0.2 92,534 - +0.4 92,584 - -0.7 92,591 - -1.7 92,595 - -1.3 92,612 - -2.0 92,612 - -3.4 92,612 - -2.9 92,616 + -1.7 92,616 + -2.5 92,616 + -0.7 92,616 + -0.7 92,619 - -1.7 92,619 - -1.3 92,619 - +0.3 92,624 - -1.7 92,624 - -2.0 92,624 - -2.5 92,624 - -0.7 92,624 - -0.7 92,653 - -2.3 92,720 + -0.7 92,770 + Dsui_0094 0.25 +0.3 92,777 + Dsui_0094 0.27 +0.3 92,877 - Dsui_0094 0.43 +0.3 92,908 - +0.3 92,908 - Dsui_0094 0.48 -1.3 92,927 + Dsui_0094 0.51 -1.7 92,935 - Dsui_0094 0.52 -1.7 92,935 - Dsui_0094 0.52 -1.7 92,935 - Dsui_0094 0.52 -1.7 92,943 - Dsui_0094 0.53 +0.3 92,994 - Dsui_0094 0.62 -2.0 93,014 + -0.7 93,033 + +0.3 93,033 + Dsui_0094 0.68 +0.3 93,041 - Dsui_0094 0.69 +0.3 93,042 - Dsui_0094 0.69 +0.3 93,050 + Dsui_0094 0.71 -0.7 93,095 + Dsui_0094 0.78 -1.3 93,127 - Dsui_0094 0.83 +0.3 93,140 - Dsui_0094 0.85 -0.7 93,291 + +0.3 93,386 - -0.7 93,432 - Dsui_0095 0.10 +0.3 93,475 + Dsui_0095 0.13 -1.7 93,484 + Dsui_0095 0.13 +0.3 93,484 + -0.7 93,522 - Dsui_0095 0.15 -0.7 93,544 + -0.7 93,553 + +0.3 93,553 + +0.3 93,561 - Dsui_0095 0.17 +0.3 93,574 + Dsui_0095 0.18 -0.7 93,582 - Dsui_0095 0.18 +0.3 93,582 - Dsui_0095 0.18 +0.3 93,610 - Dsui_0095 0.20 +0.3 93,647 - Dsui_0095 0.22 +0.3 93,704 - Dsui_0095 0.25 -0.7 93,789 - Dsui_0095 0.29 -2.7 93,792 - Dsui_0095 0.30 +0.3 93,798 + +0.3 93,798 + Dsui_0095 0.30 -0.7 93,798 + Dsui_0095 0.30 -2.0 93,868 + +0.3 93,887 - Dsui_0095 0.35 -0.7 93,906 - Dsui_0095 0.36 -0.7 93,967 - Dsui_0095 0.39 -0.7 93,967 - Dsui_0095 0.39 -0.7 94,010 + Dsui_0095 0.41 -1.3 94,018 - Dsui_0095 0.42 -2.3 94,028 + Dsui_0095 0.42 -1.7 94,051 - Dsui_0095 0.43 +0.3 94,118 + Dsui_0095 0.47 +0.3 94,152 - Dsui_0095 0.49 +0.3 94,227 + Dsui_0095 0.53 -0.7
Or see this region's nucleotide sequence