Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16305

Experiment: reconstituted MRS with Sialyllacto-N-tetraose a 5.0 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Sialyllacto-N-tetraose a 5.0 mM
1,404,225	-		BBR_RS16295	0.81	-0.7
1,404,340	-				-0.9
1,404,340	-				-0.3
1,404,414	-				-0.7
1,404,428	+				-0.3
1,404,517	+				-0.7
1,404,520	-				-0.1
1,404,523	-				-0.4
1,404,525	-				-0.6
1,404,525	-				+0.8
1,404,525	-				-0.1
1,404,525	-				-0.5
1,404,548	-				+0.6
1,404,548	-				-1.5
1,404,667	-		BBR_RS16300	0.30	+0.3
1,404,667	-		BBR_RS16300	0.30	-0.5
1,404,667	-		BBR_RS16300	0.30	+0.1
1,404,667	-		BBR_RS16300	0.30	-0.0
1,404,667	-		BBR_RS16300	0.30	-0.1
1,404,667	-		BBR_RS16300	0.30	-0.9
1,404,667	-		BBR_RS16300	0.30	-0.4
1,404,667	-		BBR_RS16300	0.30	+0.2
1,404,702	-		BBR_RS16300	0.38	-0.4
1,404,762	+		BBR_RS16300	0.53	+0.0
1,404,765	-		BBR_RS16300	0.54	-0.7
1,404,781	-		BBR_RS16300	0.58	+0.6
1,404,782	+		BBR_RS16300	0.58	+1.6
1,404,790	+		BBR_RS16300	0.60	+0.2
1,404,798	-		BBR_RS16300	0.62	+0.6
1,404,860	-		BBR_RS16300	0.77	+0.9
1,404,887	-		BBR_RS16300	0.84	+1.1
1,404,952	+				+1.8
1,404,993	+				+0.0
1,405,052	+				+0.1
1,405,096	-				+1.0
1,405,187	-				-0.9
1,405,188	+				+0.3
1,405,188	+				-1.5
1,405,196	-				-0.1
1,405,255	+				-0.4
1,405,274	+				+0.4
1,405,277	-				+0.9
1,405,279	+				+0.6
1,405,281	+		BBR_RS16305	0.10	+0.2
1,405,287	-		BBR_RS16305	0.11	+1.2
1,405,287	-		BBR_RS16305	0.11	+0.1
1,405,291	+		BBR_RS16305	0.11	-0.8
1,405,341	+		BBR_RS16305	0.17	+0.8
1,405,348	-		BBR_RS16305	0.17	+0.6
1,405,393	-		BBR_RS16305	0.22	+1.0
1,405,492	-		BBR_RS16305	0.33	+0.3
1,405,499	+		BBR_RS16305	0.33	-0.2
1,405,499	+		BBR_RS16305	0.33	+0.7
1,405,499	+		BBR_RS16305	0.33	-0.3
1,405,499	+		BBR_RS16305	0.33	+0.3
1,405,499	+		BBR_RS16305	0.33	-0.1
1,405,504	+		BBR_RS16305	0.34	-0.2
1,405,507	-		BBR_RS16305	0.34	-1.1
1,405,728	-		BBR_RS16305	0.58	-1.1
1,405,730	+		BBR_RS16305	0.58	+0.3
1,405,745	-		BBR_RS16305	0.60	+1.0
1,405,798	+		BBR_RS16305	0.65	-1.8
1,405,816	+		BBR_RS16305	0.67	-2.0
1,405,836	+		BBR_RS16305	0.69	+0.2
1,405,858	+		BBR_RS16305	0.72	-0.3
1,405,895	-		BBR_RS16305	0.76	+0.1
1,405,959	-		BBR_RS16305	0.83	+2.0
1,405,963	+		BBR_RS16305	0.83	-0.0
1,405,980	+		BBR_RS16305	0.85	+0.8
1,406,008	-		BBR_RS16305	0.88	+0.1
1,406,010	+		BBR_RS16305	0.88	+2.6
1,406,010	+		BBR_RS16305	0.88	+0.3
1,406,010	+		BBR_RS16305	0.88	-0.0
1,406,010	+		BBR_RS16305	0.88	+1.0
1,406,010	+		BBR_RS16305	0.88	-0.0
1,406,010	+		BBR_RS16305	0.88	-0.2
1,406,010	+		BBR_RS16305	0.88	-0.2
1,406,012	+		BBR_RS16305	0.88	+2.0
1,406,018	-		BBR_RS16305	0.89	+0.4
1,406,018	-		BBR_RS16305	0.89	+0.2
1,406,018	-		BBR_RS16305	0.89	-1.3
1,406,018	-		BBR_RS16305	0.89	-0.6
1,406,018	-		BBR_RS16305	0.89	+0.7
1,406,018	-		BBR_RS16305	0.89	-0.1
1,406,018	-		BBR_RS16305	0.89	+0.3
1,406,018	-		BBR_RS16305	0.89	+0.4
1,406,018	-		BBR_RS16305	0.89	-0.3
1,406,018	-		BBR_RS16305	0.89	-0.4
1,406,018	-		BBR_RS16305	0.89	-1.2
1,406,018	-		BBR_RS16305	0.89	-0.2
1,406,079	-				+0.9
1,406,138	+				-0.6
1,406,158	-				+1.1
1,406,194	+				-0.1
1,406,260	+				+1.0
1,406,268	-		BBR_RS16310	0.10	+2.2
1,406,270	+		BBR_RS16310	0.11	+0.4
1,406,270	+		BBR_RS16310	0.11	-0.8
1,406,273	-		BBR_RS16310	0.11	+1.0
1,406,273	-		BBR_RS16310	0.11	-1.1
1,406,278	-		BBR_RS16310	0.12	+0.4
1,406,314	-		BBR_RS16310	0.17	-0.0
1,406,316	+		BBR_RS16310	0.17	-0.3
1,406,341	-		BBR_RS16310	0.21	-0.0
1,406,365	+		BBR_RS16310	0.24	+0.2
1,406,384	+		BBR_RS16310	0.27	-0.0
1,406,392	-		BBR_RS16310	0.28	+0.5
1,406,515	+		BBR_RS16310	0.46	+0.2
1,406,523	-		BBR_RS16310	0.47	+0.0
1,406,529	+		BBR_RS16310	0.48	+0.4
1,406,531	+		BBR_RS16310	0.48	-0.0
1,406,531	+		BBR_RS16310	0.48	+0.4
1,406,539	-		BBR_RS16310	0.49	-0.2
1,406,580	+		BBR_RS16310	0.55	+0.4
1,406,662	-		BBR_RS16310	0.67	-0.5
1,406,662	-		BBR_RS16310	0.67	-0.0
1,406,710	+		BBR_RS16310	0.74	-0.8
1,406,710	+		BBR_RS16310	0.74	-0.2
1,406,764	-		BBR_RS16310	0.81	-0.0
1,406,834	+				-0.4
1,407,035	+				-0.5
1,407,035	+				+0.4
1,407,115	-				+0.1