Experiment: L-Methionine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2762 and DvMF_2763 are separated by 460 nucleotides DvMF_2763 and DvMF_2764 are separated by 53 nucleotides
DvMF_2762: DvMF_2762 - diguanylate cyclase with hemerythrin-like metal-binding domain (RefSeq), at 3,492,524 to 3,494,419
_2762
DvMF_2763: DvMF_2763 - ABC-type tungstate transport system, permease component (RefSeq), at 3,494,880 to 3,495,704
_2763
DvMF_2764: DvMF_2764 - hypothetical protein (RefSeq), at 3,495,758 to 3,497,035
_2764
Position (kb)
3494
3495
3496 Strain fitness (log2 ratio)
-1
0
1
2 at 3493.908 kb on + strand, within DvMF_2762 at 3493.916 kb on - strand, within DvMF_2762 at 3493.916 kb on - strand, within DvMF_2762 at 3493.916 kb on - strand, within DvMF_2762 at 3494.144 kb on - strand, within DvMF_2762 at 3494.265 kb on - strand at 3494.286 kb on - strand at 3494.429 kb on - strand at 3494.472 kb on + strand at 3494.472 kb on + strand at 3494.480 kb on - strand at 3494.664 kb on + strand at 3494.665 kb on - strand at 3494.957 kb on - strand at 3494.957 kb on - strand at 3495.097 kb on - strand, within DvMF_2763 at 3495.107 kb on - strand, within DvMF_2763 at 3495.216 kb on - strand, within DvMF_2763 at 3495.320 kb on + strand, within DvMF_2763 at 3495.430 kb on - strand, within DvMF_2763 at 3495.568 kb on - strand, within DvMF_2763 at 3495.729 kb on + strand at 3495.915 kb on - strand, within DvMF_2764 at 3495.961 kb on + strand, within DvMF_2764 at 3496.558 kb on - strand, within DvMF_2764 at 3496.656 kb on + strand, within DvMF_2764
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine as nutrient remove 3,493,908 + DvMF_2762 0.73 +0.4 3,493,916 - DvMF_2762 0.73 +0.5 3,493,916 - DvMF_2762 0.73 +0.6 3,493,916 - DvMF_2762 0.73 +0.4 3,494,144 - DvMF_2762 0.85 +0.3 3,494,265 - +0.3 3,494,286 - +0.6 3,494,429 - -0.4 3,494,472 + +0.1 3,494,472 + +0.4 3,494,480 - +0.3 3,494,664 + +0.4 3,494,665 - +0.7 3,494,957 - +0.5 3,494,957 - +0.3 3,495,097 - DvMF_2763 0.26 +1.1 3,495,107 - DvMF_2763 0.28 +2.0 3,495,216 - DvMF_2763 0.41 +0.7 3,495,320 + DvMF_2763 0.53 +0.4 3,495,430 - DvMF_2763 0.67 +0.5 3,495,568 - DvMF_2763 0.83 +0.3 3,495,729 + +0.8 3,495,915 - DvMF_2764 0.12 +1.6 3,495,961 + DvMF_2764 0.16 +0.1 3,496,558 - DvMF_2764 0.63 +1.0 3,496,656 + DvMF_2764 0.70 +1.0
Or see this region's nucleotide sequence