Experiment: L-Methionine as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2738 and DvMF_2739 are separated by 2 nucleotides DvMF_2739 and DvMF_2740 are separated by 12 nucleotides DvMF_2740 and DvMF_2741 overlap by 4 nucleotides
DvMF_2738: DvMF_2738 - type II secretion system protein E (RefSeq), at 3,463,715 to 3,465,589
_2738
DvMF_2739: DvMF_2739 - response regulator receiver protein (RefSeq), at 3,465,592 to 3,467,037
_2739
DvMF_2740: DvMF_2740 - hypothetical protein (RefSeq), at 3,467,050 to 3,467,376
_2740
DvMF_2741: DvMF_2741 - type II and III secretion system protein (RefSeq), at 3,467,373 to 3,468,854
_2741
Position (kb)
3465
3466
3467
3468 Strain fitness (log2 ratio)
-1
0
1 at 3464.728 kb on + strand, within DvMF_2738 at 3464.781 kb on - strand, within DvMF_2738 at 3465.015 kb on + strand, within DvMF_2738 at 3465.194 kb on + strand, within DvMF_2738 at 3465.399 kb on - strand, within DvMF_2738 at 3465.417 kb on - strand at 3465.453 kb on + strand at 3465.535 kb on - strand at 3465.597 kb on + strand at 3465.851 kb on + strand, within DvMF_2739 at 3465.938 kb on - strand, within DvMF_2739 at 3466.248 kb on + strand, within DvMF_2739 at 3466.248 kb on + strand, within DvMF_2739 at 3466.256 kb on - strand, within DvMF_2739 at 3466.264 kb on - strand, within DvMF_2739 at 3466.444 kb on + strand, within DvMF_2739 at 3466.846 kb on + strand, within DvMF_2739 at 3467.219 kb on + strand, within DvMF_2740 at 3467.260 kb on - strand, within DvMF_2740 at 3467.386 kb on + strand at 3467.393 kb on - strand at 3467.459 kb on - strand at 3467.619 kb on - strand, within DvMF_2741 at 3467.748 kb on + strand, within DvMF_2741
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine as nutrient remove 3,464,728 + DvMF_2738 0.54 -0.1 3,464,781 - DvMF_2738 0.57 +0.4 3,465,015 + DvMF_2738 0.69 +1.1 3,465,194 + DvMF_2738 0.79 +1.0 3,465,399 - DvMF_2738 0.90 +0.2 3,465,417 - +1.3 3,465,453 + +0.3 3,465,535 - +0.5 3,465,597 + +0.8 3,465,851 + DvMF_2739 0.18 +0.6 3,465,938 - DvMF_2739 0.24 +0.2 3,466,248 + DvMF_2739 0.45 -0.7 3,466,248 + DvMF_2739 0.45 +0.4 3,466,256 - DvMF_2739 0.46 -0.3 3,466,264 - DvMF_2739 0.46 +0.2 3,466,444 + DvMF_2739 0.59 -0.1 3,466,846 + DvMF_2739 0.87 -0.3 3,467,219 + DvMF_2740 0.52 +0.6 3,467,260 - DvMF_2740 0.64 +0.2 3,467,386 + +0.7 3,467,393 - +0.0 3,467,459 - +0.2 3,467,619 - DvMF_2741 0.17 +1.2 3,467,748 + DvMF_2741 0.25 +0.5
Or see this region's nucleotide sequence