Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2623

Experiment: L-Methionine as nutrient

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2622 and DvMF_2623 are separated by 256 nucleotidesDvMF_2623 and DvMF_2624 are separated by 346 nucleotides DvMF_2622: DvMF_2622 - nitrogenase cofactor biosynthesis protein NifB (RefSeq), at 3,312,435 to 3,313,718 _2622 DvMF_2623: DvMF_2623 - Rhodanese domain protein (RefSeq), at 3,313,975 to 3,314,430 _2623 DvMF_2624: DvMF_2624 - acetolactate synthase, small subunit (RefSeq), at 3,314,777 to 3,315,259 _2624 Position (kb) 3313 3314 3315Strain fitness (log2 ratio) -1 0 1 2 3at 3312.976 kb on + strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.976 kb on + strand, within DvMF_2622at 3312.984 kb on - strand, within DvMF_2622at 3313.004 kb on + strand, within DvMF_2622at 3313.082 kb on - strand, within DvMF_2622at 3313.415 kb on - strand, within DvMF_2622at 3313.439 kb on - strand, within DvMF_2622at 3313.486 kb on + strand, within DvMF_2622at 3313.486 kb on + strand, within DvMF_2622at 3313.494 kb on - strand, within DvMF_2622at 3314.042 kb on - strand, within DvMF_2623at 3314.335 kb on + strand, within DvMF_2623at 3314.478 kb on - strandat 3314.547 kb on - strandat 3314.547 kb on - strandat 3315.001 kb on - strand, within DvMF_2624at 3315.040 kb on + strand, within DvMF_2624at 3315.227 kb on - strandat 3315.353 kb on + strandat 3315.353 kb on + strandat 3315.383 kb on + strandat 3315.420 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
remove
3,312,976 + DvMF_2622 0.42 +0.4
3,312,976 + DvMF_2622 0.42 -0.3
3,312,976 + DvMF_2622 0.42 +0.6
3,312,976 + DvMF_2622 0.42 +0.6
3,312,984 - DvMF_2622 0.43 +0.4
3,313,004 + DvMF_2622 0.44 +0.4
3,313,082 - DvMF_2622 0.50 +0.3
3,313,415 - DvMF_2622 0.76 +1.9
3,313,439 - DvMF_2622 0.78 +0.0
3,313,486 + DvMF_2622 0.82 +0.2
3,313,486 + DvMF_2622 0.82 +0.0
3,313,494 - DvMF_2622 0.82 +0.5
3,314,042 - DvMF_2623 0.15 +0.2
3,314,335 + DvMF_2623 0.79 +1.1
3,314,478 - +0.9
3,314,547 - +0.2
3,314,547 - +0.7
3,315,001 - DvMF_2624 0.46 +2.8
3,315,040 + DvMF_2624 0.54 +1.0
3,315,227 - -0.5
3,315,353 + +0.6
3,315,353 + -0.2
3,315,383 + +0.8
3,315,420 + +0.5

Or see this region's nucleotide sequence