Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2433

Experiment: L-Methionine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2431 and DvMF_2432 are separated by 19 nucleotidesDvMF_2432 and DvMF_2433 are separated by 9 nucleotidesDvMF_2433 and DvMF_2434 overlap by 22 nucleotidesDvMF_2434 and DvMF_2435 are separated by 47 nucleotides DvMF_2431: DvMF_2431 - hypothetical protein (RefSeq), at 3,067,197 to 3,067,970 _2431 DvMF_2432: DvMF_2432 - type III secretion apparatus lipoprotein, YscJ/HrcJ family (RefSeq), at 3,067,990 to 3,068,823 _2432 DvMF_2433: DvMF_2433 - hypothetical protein (RefSeq), at 3,068,833 to 3,069,570 _2433 DvMF_2434: DvMF_2434 - type III secretion system protein (RefSeq), at 3,069,549 to 3,070,166 _2434 DvMF_2435: DvMF_2435 - type III secretion system ATPase (RefSeq), at 3,070,214 to 3,071,530 _2435 Position (kb) 3068 3069 3070Strain fitness (log2 ratio) -1 0 1at 3067.862 kb on - strand, within DvMF_2431at 3067.952 kb on + strandat 3068.118 kb on + strand, within DvMF_2432at 3068.118 kb on + strand, within DvMF_2432at 3068.126 kb on - strand, within DvMF_2432at 3068.825 kb on - strandat 3068.825 kb on - strandat 3068.943 kb on - strand, within DvMF_2433at 3069.371 kb on + strand, within DvMF_2433at 3069.627 kb on + strand, within DvMF_2434at 3069.633 kb on - strand, within DvMF_2434at 3069.704 kb on + strand, within DvMF_2434at 3070.269 kb on + strandat 3070.292 kb on + strandat 3070.332 kb on + strandat 3070.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
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3,067,862 - DvMF_2431 0.86 +0.3
3,067,952 + +0.1
3,068,118 + DvMF_2432 0.15 +0.8
3,068,118 + DvMF_2432 0.15 +0.7
3,068,126 - DvMF_2432 0.16 +0.9
3,068,825 - +1.0
3,068,825 - +0.1
3,068,943 - DvMF_2433 0.15 +1.3
3,069,371 + DvMF_2433 0.73 +1.2
3,069,627 + DvMF_2434 0.13 +0.6
3,069,633 - DvMF_2434 0.14 +0.8
3,069,704 + DvMF_2434 0.25 +0.5
3,070,269 + +0.1
3,070,292 + +1.2
3,070,332 + +0.9
3,070,340 - +0.8

Or see this region's nucleotide sequence