Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2130

Experiment: L-Methionine as nutrient

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2129 and DvMF_2130 are separated by 842 nucleotidesDvMF_2130 and DvMF_R0055 are separated by 67 nucleotidesDvMF_R0055 and DvMF_2131 are separated by 562 nucleotides DvMF_2129: DvMF_2129 - L-lactate transport (RefSeq), at 2,649,696 to 2,651,351 _2129 DvMF_2130: DvMF_2130 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,652,194 to 2,652,811 _2130 DvMF_R0055: DvMF_R0055 - tRNA-Ala (RefSeq), at 2,652,879 to 2,652,954 _R0055 DvMF_2131: DvMF_2131 - prolipoprotein diacylglyceryl transferase (RefSeq), at 2,653,517 to 2,654,314 _2131 Position (kb) 2652 2653Strain fitness (log2 ratio) -1 0 1at 2651.407 kb on - strandat 2651.446 kb on + strandat 2651.454 kb on - strandat 2651.612 kb on - strandat 2651.612 kb on - strandat 2651.689 kb on + strandat 2651.922 kb on - strandat 2651.959 kb on + strandat 2652.142 kb on - strandat 2652.257 kb on - strand, within DvMF_2130at 2652.303 kb on + strand, within DvMF_2130at 2652.315 kb on + strand, within DvMF_2130at 2652.338 kb on - strand, within DvMF_2130at 2652.374 kb on - strand, within DvMF_2130at 2652.381 kb on + strand, within DvMF_2130at 2652.599 kb on - strand, within DvMF_2130at 2652.614 kb on - strand, within DvMF_2130at 2652.700 kb on + strand, within DvMF_2130at 2652.865 kb on + strandat 2653.088 kb on + strandat 2653.378 kb on + strandat 2653.450 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
remove
2,651,407 - -0.1
2,651,446 + +1.2
2,651,454 - +0.4
2,651,612 - +0.0
2,651,612 - +0.0
2,651,689 + -0.0
2,651,922 - +0.6
2,651,959 + +0.4
2,652,142 - +0.3
2,652,257 - DvMF_2130 0.10 +0.9
2,652,303 + DvMF_2130 0.18 +0.9
2,652,315 + DvMF_2130 0.20 +0.7
2,652,338 - DvMF_2130 0.23 +1.1
2,652,374 - DvMF_2130 0.29 +1.3
2,652,381 + DvMF_2130 0.30 +1.6
2,652,599 - DvMF_2130 0.66 +1.3
2,652,614 - DvMF_2130 0.68 +0.7
2,652,700 + DvMF_2130 0.82 +0.0
2,652,865 + +0.6
2,653,088 + +0.8
2,653,378 + +0.2
2,653,450 - +0.9

Or see this region's nucleotide sequence