Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1854

Experiment: L-Methionine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1853 and DvMF_1854 are separated by 108 nucleotidesDvMF_1854 and DvMF_1855 are separated by 2 nucleotidesDvMF_1855 and DvMF_1856 are separated by 56 nucleotides DvMF_1853: DvMF_1853 - glycosyl transferase group 1 (RefSeq), at 2,267,161 to 2,268,318 _1853 DvMF_1854: DvMF_1854 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,268,427 to 2,269,359 _1854 DvMF_1855: DvMF_1855 - glycosyltransferase-like protein (RefSeq), at 2,269,362 to 2,270,138 _1855 DvMF_1856: DvMF_1856 - hypothetical protein (RefSeq), at 2,270,195 to 2,270,572 _1856 Position (kb) 2268 2269 2270Strain fitness (log2 ratio) -1 0 1at 2267.446 kb on - strand, within DvMF_1853at 2267.679 kb on - strand, within DvMF_1853at 2267.842 kb on - strand, within DvMF_1853at 2267.916 kb on + strand, within DvMF_1853at 2267.937 kb on - strand, within DvMF_1853at 2268.015 kb on - strand, within DvMF_1853at 2268.052 kb on - strand, within DvMF_1853at 2268.057 kb on - strand, within DvMF_1853at 2268.667 kb on - strand, within DvMF_1854at 2268.837 kb on + strand, within DvMF_1854at 2268.937 kb on + strand, within DvMF_1854at 2269.043 kb on - strand, within DvMF_1854at 2269.068 kb on + strand, within DvMF_1854at 2269.143 kb on - strand, within DvMF_1854at 2269.143 kb on - strand, within DvMF_1854at 2269.451 kb on + strand, within DvMF_1855at 2269.478 kb on - strand, within DvMF_1855at 2269.675 kb on - strand, within DvMF_1855at 2269.675 kb on - strand, within DvMF_1855at 2269.682 kb on - strand, within DvMF_1855at 2269.754 kb on + strand, within DvMF_1855at 2269.859 kb on - strand, within DvMF_1855at 2269.879 kb on + strand, within DvMF_1855at 2269.887 kb on - strand, within DvMF_1855at 2270.019 kb on - strand, within DvMF_1855at 2270.065 kb on - strandat 2270.065 kb on - strandat 2270.065 kb on - strandat 2270.065 kb on - strandat 2270.192 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
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2,267,446 - DvMF_1853 0.25 +0.2
2,267,679 - DvMF_1853 0.45 +0.6
2,267,842 - DvMF_1853 0.59 +0.5
2,267,916 + DvMF_1853 0.65 +0.4
2,267,937 - DvMF_1853 0.67 +0.4
2,268,015 - DvMF_1853 0.74 +0.3
2,268,052 - DvMF_1853 0.77 +0.8
2,268,057 - DvMF_1853 0.77 -0.2
2,268,667 - DvMF_1854 0.26 +0.5
2,268,837 + DvMF_1854 0.44 +0.6
2,268,937 + DvMF_1854 0.55 +0.4
2,269,043 - DvMF_1854 0.66 +0.8
2,269,068 + DvMF_1854 0.69 +0.3
2,269,143 - DvMF_1854 0.77 +0.6
2,269,143 - DvMF_1854 0.77 -0.2
2,269,451 + DvMF_1855 0.11 +0.3
2,269,478 - DvMF_1855 0.15 +0.8
2,269,675 - DvMF_1855 0.40 +0.6
2,269,675 - DvMF_1855 0.40 +0.6
2,269,682 - DvMF_1855 0.41 +0.6
2,269,754 + DvMF_1855 0.50 +0.1
2,269,859 - DvMF_1855 0.64 +0.4
2,269,879 + DvMF_1855 0.67 +0.1
2,269,887 - DvMF_1855 0.68 -0.1
2,270,019 - DvMF_1855 0.85 +0.2
2,270,065 - +0.7
2,270,065 - +0.4
2,270,065 - -0.3
2,270,065 - +1.4
2,270,192 + +0.3

Or see this region's nucleotide sequence