Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0938

Experiment: L-Methionine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0937 and DvMF_0938 are separated by 4 nucleotidesDvMF_0938 and DvMF_0939 are separated by 306 nucleotidesDvMF_0939 and DvMF_0940 are separated by 167 nucleotides DvMF_0937: DvMF_0937 - ferredoxin-NADP(+) reductase subunit alpha (RefSeq), at 1,137,169 to 1,138,017 _0937 DvMF_0938: DvMF_0938 - putative oxidoreductase (RefSeq), at 1,138,022 to 1,139,467 _0938 DvMF_0939: DvMF_0939 - hypothetical protein (RefSeq), at 1,139,774 to 1,140,064 _0939 DvMF_0940: DvMF_0940 - histidinol phosphate phosphatase HisJ family (RefSeq), at 1,140,232 to 1,141,056 _0940 Position (kb) 1138 1139 1140Strain fitness (log2 ratio) -1 0 1at 1137.099 kb on + strandat 1137.406 kb on - strand, within DvMF_0937at 1137.537 kb on - strand, within DvMF_0937at 1137.667 kb on + strand, within DvMF_0937at 1137.667 kb on + strand, within DvMF_0937at 1137.713 kb on - strand, within DvMF_0937at 1137.713 kb on - strand, within DvMF_0937at 1137.792 kb on + strand, within DvMF_0937at 1137.971 kb on - strandat 1138.014 kb on - strandat 1138.032 kb on + strandat 1138.143 kb on - strandat 1138.190 kb on + strand, within DvMF_0938at 1138.383 kb on - strand, within DvMF_0938at 1138.383 kb on - strand, within DvMF_0938at 1138.473 kb on - strand, within DvMF_0938at 1138.482 kb on + strand, within DvMF_0938at 1138.537 kb on - strand, within DvMF_0938at 1138.557 kb on + strand, within DvMF_0938at 1138.661 kb on + strand, within DvMF_0938at 1138.933 kb on - strand, within DvMF_0938at 1138.967 kb on + strand, within DvMF_0938at 1139.231 kb on - strand, within DvMF_0938at 1139.265 kb on - strand, within DvMF_0938at 1139.883 kb on + strand, within DvMF_0939at 1139.895 kb on + strand, within DvMF_0939at 1139.973 kb on + strand, within DvMF_0939at 1140.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
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1,137,099 + +0.0
1,137,406 - DvMF_0937 0.28 -0.1
1,137,537 - DvMF_0937 0.43 -1.4
1,137,667 + DvMF_0937 0.59 -0.3
1,137,667 + DvMF_0937 0.59 -0.0
1,137,713 - DvMF_0937 0.64 +0.3
1,137,713 - DvMF_0937 0.64 -0.9
1,137,792 + DvMF_0937 0.73 +0.2
1,137,971 - +0.4
1,138,014 - -0.0
1,138,032 + -0.1
1,138,143 - +0.1
1,138,190 + DvMF_0938 0.12 +1.3
1,138,383 - DvMF_0938 0.25 -0.1
1,138,383 - DvMF_0938 0.25 -1.1
1,138,473 - DvMF_0938 0.31 -0.1
1,138,482 + DvMF_0938 0.32 -0.1
1,138,537 - DvMF_0938 0.36 -0.3
1,138,557 + DvMF_0938 0.37 -0.3
1,138,661 + DvMF_0938 0.44 -0.9
1,138,933 - DvMF_0938 0.63 +0.1
1,138,967 + DvMF_0938 0.65 +0.1
1,139,231 - DvMF_0938 0.84 +0.8
1,139,265 - DvMF_0938 0.86 +0.1
1,139,883 + DvMF_0939 0.37 +0.6
1,139,895 + DvMF_0939 0.42 +0.4
1,139,973 + DvMF_0939 0.68 +1.3
1,140,150 - -0.0

Or see this region's nucleotide sequence