Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0851

Experiment: L-Methionine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0850 and DvMF_0851 are separated by 24 nucleotidesDvMF_0851 and DvMF_0852 are separated by 160 nucleotidesDvMF_0852 and DvMF_0853 are separated by 12 nucleotides DvMF_0850: DvMF_0850 - arginyl-tRNA synthetase (RefSeq), at 1,027,677 to 1,029,332 _0850 DvMF_0851: DvMF_0851 - Sporulation domain protein (RefSeq), at 1,029,357 to 1,030,292 _0851 DvMF_0852: DvMF_0852 - protein of unknown function DUF140 (RefSeq), at 1,030,453 to 1,031,256 _0852 DvMF_0853: DvMF_0853 - ABC transporter related (RefSeq), at 1,031,269 to 1,032,090 _0853 Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -1 0 1 2at 1029.446 kb on + strandat 1029.724 kb on - strand, within DvMF_0851at 1029.814 kb on - strand, within DvMF_0851at 1030.190 kb on + strand, within DvMF_0851at 1030.372 kb on - strandat 1030.476 kb on - strandat 1030.680 kb on - strand, within DvMF_0852at 1030.988 kb on + strand, within DvMF_0852at 1030.996 kb on - strand, within DvMF_0852at 1031.040 kb on - strand, within DvMF_0852

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine as nutrient
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1,029,446 + +0.5
1,029,724 - DvMF_0851 0.39 +1.9
1,029,814 - DvMF_0851 0.49 +2.5
1,030,190 + DvMF_0851 0.89 +1.0
1,030,372 - +0.7
1,030,476 - +0.6
1,030,680 - DvMF_0852 0.28 -0.5
1,030,988 + DvMF_0852 0.67 +0.6
1,030,996 - DvMF_0852 0.68 -0.1
1,031,040 - DvMF_0852 0.73 +0.2

Or see this region's nucleotide sequence