Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3515 and Dshi_3516 are separated by 123 nucleotides Dshi_3516 and Dshi_3517 overlap by 4 nucleotides
Dshi_3515: Dshi_3515 - O-methyltransferase family 2 (RefSeq), at 3,694,523 to 3,695,653
_3515
Dshi_3516: Dshi_3516 - chlorophyll synthesis pathway, BchC (RefSeq), at 3,695,777 to 3,696,715
_3516
Dshi_3517: Dshi_3517 - chlorophyllide reductase iron protein subunit X (RefSeq), at 3,696,712 to 3,697,719
_3517
Position (kb)
3695
3696
3697 Strain fitness (log2 ratio)
-1
0
1
2 at 3694.811 kb on - strand, within Dshi_3515 at 3694.839 kb on - strand, within Dshi_3515 at 3694.858 kb on + strand, within Dshi_3515 at 3694.931 kb on + strand, within Dshi_3515 at 3695.077 kb on + strand, within Dshi_3515 at 3695.265 kb on - strand, within Dshi_3515 at 3695.316 kb on + strand, within Dshi_3515 at 3695.326 kb on + strand, within Dshi_3515 at 3695.326 kb on + strand, within Dshi_3515 at 3695.326 kb on + strand, within Dshi_3515 at 3695.334 kb on - strand, within Dshi_3515 at 3695.334 kb on - strand, within Dshi_3515 at 3695.334 kb on - strand, within Dshi_3515 at 3695.395 kb on - strand, within Dshi_3515 at 3695.425 kb on - strand, within Dshi_3515 at 3695.723 kb on - strand at 3695.830 kb on - strand at 3696.009 kb on + strand, within Dshi_3516 at 3696.084 kb on - strand, within Dshi_3516 at 3696.336 kb on + strand, within Dshi_3516 at 3696.408 kb on - strand, within Dshi_3516 at 3696.492 kb on + strand, within Dshi_3516 at 3696.539 kb on + strand, within Dshi_3516 at 3696.575 kb on - strand, within Dshi_3516 at 3696.629 kb on - strand at 3696.785 kb on + strand at 3696.793 kb on - strand at 3696.827 kb on - strand, within Dshi_3517 at 3696.870 kb on - strand, within Dshi_3517 at 3696.972 kb on + strand, within Dshi_3517 at 3697.070 kb on + strand, within Dshi_3517 at 3697.214 kb on - strand, within Dshi_3517 at 3697.239 kb on + strand, within Dshi_3517 at 3697.239 kb on + strand, within Dshi_3517 at 3697.267 kb on + strand, within Dshi_3517 at 3697.279 kb on - strand, within Dshi_3517 at 3697.305 kb on + strand, within Dshi_3517 at 3697.385 kb on + strand, within Dshi_3517 at 3697.393 kb on - strand, within Dshi_3517 at 3697.404 kb on - strand, within Dshi_3517 at 3697.451 kb on + strand, within Dshi_3517 at 3697.459 kb on - strand, within Dshi_3517 at 3697.533 kb on + strand, within Dshi_3517 at 3697.541 kb on - strand, within Dshi_3517 at 3697.541 kb on - strand, within Dshi_3517 at 3697.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 3,694,811 - Dshi_3515 0.25 -1.1 3,694,839 - Dshi_3515 0.28 +1.3 3,694,858 + Dshi_3515 0.30 +0.1 3,694,931 + Dshi_3515 0.36 +0.0 3,695,077 + Dshi_3515 0.49 -0.3 3,695,265 - Dshi_3515 0.66 -0.3 3,695,316 + Dshi_3515 0.70 -0.4 3,695,326 + Dshi_3515 0.71 +0.6 3,695,326 + Dshi_3515 0.71 -0.4 3,695,326 + Dshi_3515 0.71 +0.6 3,695,334 - Dshi_3515 0.72 +0.4 3,695,334 - Dshi_3515 0.72 -0.1 3,695,334 - Dshi_3515 0.72 -0.5 3,695,395 - Dshi_3515 0.77 -0.4 3,695,425 - Dshi_3515 0.80 -0.1 3,695,723 - +0.0 3,695,830 - +0.8 3,696,009 + Dshi_3516 0.25 +1.0 3,696,084 - Dshi_3516 0.33 +0.1 3,696,336 + Dshi_3516 0.60 +0.4 3,696,408 - Dshi_3516 0.67 +0.5 3,696,492 + Dshi_3516 0.76 +0.5 3,696,539 + Dshi_3516 0.81 +0.9 3,696,575 - Dshi_3516 0.85 -0.1 3,696,629 - +0.6 3,696,785 + -0.0 3,696,793 - +1.6 3,696,827 - Dshi_3517 0.11 +0.1 3,696,870 - Dshi_3517 0.16 +0.4 3,696,972 + Dshi_3517 0.26 +0.6 3,697,070 + Dshi_3517 0.36 +1.0 3,697,214 - Dshi_3517 0.50 +0.3 3,697,239 + Dshi_3517 0.52 +0.4 3,697,239 + Dshi_3517 0.52 +1.3 3,697,267 + Dshi_3517 0.55 -0.8 3,697,279 - Dshi_3517 0.56 +0.2 3,697,305 + Dshi_3517 0.59 +0.2 3,697,385 + Dshi_3517 0.67 +0.7 3,697,393 - Dshi_3517 0.68 +0.4 3,697,404 - Dshi_3517 0.69 +1.1 3,697,451 + Dshi_3517 0.73 +1.2 3,697,459 - Dshi_3517 0.74 +0.4 3,697,533 + Dshi_3517 0.81 +0.6 3,697,541 - Dshi_3517 0.82 +0.6 3,697,541 - Dshi_3517 0.82 +0.9 3,697,674 + +1.8
Or see this region's nucleotide sequence