Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2917 and Dshi_2918 are separated by 28 nucleotides Dshi_2918 and Dshi_2919 are separated by 169 nucleotides Dshi_2919 and Dshi_2920 are separated by 43 nucleotides Dshi_2920 and Dshi_2921 are separated by 376 nucleotides
Dshi_2917: Dshi_2917 - amidohydrolase (RefSeq), at 3,075,327 to 3,076,484
_2917
Dshi_2918: Dshi_2918 - GCN5-related N-acetyltransferase (RefSeq), at 3,076,513 to 3,077,004
_2918
Dshi_2919: Dshi_2919 - chaperonin GroEL (RefSeq), at 3,077,174 to 3,078,817
_2919
Dshi_2920: Dshi_2920 - chaperonin Cpn10 (RefSeq), at 3,078,861 to 3,079,172
_2920
Dshi_2921: Dshi_2921 - hypothetical protein (RefSeq), at 3,079,549 to 3,080,532
_2921
Position (kb)
3077
3078
3079 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3076.188 kb on - strand, within Dshi_2917 at 3076.283 kb on + strand, within Dshi_2917 at 3076.729 kb on + strand, within Dshi_2918 at 3076.866 kb on + strand, within Dshi_2918 at 3076.874 kb on - strand, within Dshi_2918 at 3077.045 kb on - strand at 3079.370 kb on + strand at 3079.381 kb on + strand at 3079.386 kb on + strand at 3079.392 kb on + strand at 3079.405 kb on - strand at 3079.405 kb on - strand at 3079.405 kb on - strand at 3079.414 kb on + strand at 3079.422 kb on - strand at 3079.565 kb on + strand at 3079.565 kb on + strand at 3079.565 kb on + strand at 3079.565 kb on + strand at 3079.565 kb on + strand at 3079.565 kb on + strand at 3079.565 kb on + strand at 3079.565 kb on + strand at 3079.573 kb on - strand at 3079.573 kb on - strand at 3079.573 kb on - strand at 3079.573 kb on - strand at 3079.573 kb on - strand at 3079.573 kb on - strand at 3079.573 kb on - strand at 3079.573 kb on - strand at 3079.575 kb on + strand at 3079.665 kb on + strand, within Dshi_2921 at 3079.679 kb on + strand, within Dshi_2921 at 3079.720 kb on + strand, within Dshi_2921 at 3079.726 kb on - strand, within Dshi_2921 at 3079.740 kb on + strand, within Dshi_2921 at 3079.747 kb on - strand, within Dshi_2921 at 3079.747 kb on - strand, within Dshi_2921 at 3079.747 kb on - strand, within Dshi_2921 at 3079.751 kb on + strand, within Dshi_2921 at 3079.754 kb on - strand, within Dshi_2921 at 3079.754 kb on - strand, within Dshi_2921 at 3079.774 kb on + strand, within Dshi_2921 at 3079.799 kb on + strand, within Dshi_2921
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 3,076,188 - Dshi_2917 0.74 -1.9 3,076,283 + Dshi_2917 0.83 -1.3 3,076,729 + Dshi_2918 0.44 +0.9 3,076,866 + Dshi_2918 0.72 -0.3 3,076,874 - Dshi_2918 0.73 -0.5 3,077,045 - +0.2 3,079,370 + -1.6 3,079,381 + +0.0 3,079,386 + +0.0 3,079,392 + -0.6 3,079,405 - -0.6 3,079,405 - -0.5 3,079,405 - -0.4 3,079,414 + -0.5 3,079,422 - -0.8 3,079,565 + +0.3 3,079,565 + +0.9 3,079,565 + -1.2 3,079,565 + -0.3 3,079,565 + -1.0 3,079,565 + -0.4 3,079,565 + -0.2 3,079,565 + +0.0 3,079,573 - +0.5 3,079,573 - +0.5 3,079,573 - -0.4 3,079,573 - +0.1 3,079,573 - +0.3 3,079,573 - +0.4 3,079,573 - +1.8 3,079,573 - +2.0 3,079,575 + -1.8 3,079,665 + Dshi_2921 0.12 -0.5 3,079,679 + Dshi_2921 0.13 -0.6 3,079,720 + Dshi_2921 0.17 -0.1 3,079,726 - Dshi_2921 0.18 -0.2 3,079,740 + Dshi_2921 0.19 +1.8 3,079,747 - Dshi_2921 0.20 +0.2 3,079,747 - Dshi_2921 0.20 +0.3 3,079,747 - Dshi_2921 0.20 -0.2 3,079,751 + Dshi_2921 0.21 -2.3 3,079,754 - Dshi_2921 0.21 +0.1 3,079,754 - Dshi_2921 0.21 +0.5 3,079,774 + Dshi_2921 0.23 +0.1 3,079,799 + Dshi_2921 0.25 +0.2
Or see this region's nucleotide sequence