Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2871 and Dshi_2872 overlap by 1 nucleotides Dshi_2872 and Dshi_2873 are separated by 12 nucleotides Dshi_2873 and Dshi_2874 are separated by 3 nucleotides
Dshi_2871: Dshi_2871 - MaoC domain protein dehydratase (RefSeq), at 3,026,266 to 3,027,297
_2871
Dshi_2872: Dshi_2872 - hypothetical protein (RefSeq), at 3,027,297 to 3,027,500
_2872
Dshi_2873: Dshi_2873 - NnrUfamily protein (RefSeq), at 3,027,513 to 3,028,076
_2873
Dshi_2874: Dshi_2874 - Citrate (pro-3S)-lyase (RefSeq), at 3,028,080 to 3,028,967
_2874
Position (kb)
3027
3028
3029 Strain fitness (log2 ratio)
-1
0
1 at 3026.558 kb on - strand, within Dshi_2871 at 3026.565 kb on + strand, within Dshi_2871 at 3026.592 kb on + strand, within Dshi_2871 at 3026.700 kb on + strand, within Dshi_2871 at 3026.741 kb on + strand, within Dshi_2871 at 3026.867 kb on - strand, within Dshi_2871 at 3026.886 kb on - strand, within Dshi_2871 at 3027.032 kb on - strand, within Dshi_2871 at 3027.041 kb on - strand, within Dshi_2871 at 3027.131 kb on + strand, within Dshi_2871 at 3027.131 kb on + strand, within Dshi_2871 at 3027.188 kb on + strand, within Dshi_2871 at 3027.211 kb on + strand at 3027.344 kb on - strand, within Dshi_2872 at 3027.401 kb on - strand, within Dshi_2872 at 3027.575 kb on - strand, within Dshi_2873 at 3027.684 kb on - strand, within Dshi_2873 at 3027.793 kb on + strand, within Dshi_2873 at 3027.793 kb on + strand, within Dshi_2873 at 3027.878 kb on - strand, within Dshi_2873 at 3027.880 kb on - strand, within Dshi_2873 at 3028.005 kb on - strand, within Dshi_2873 at 3028.077 kb on + strand at 3028.090 kb on + strand at 3028.205 kb on + strand, within Dshi_2874 at 3028.296 kb on + strand, within Dshi_2874 at 3028.430 kb on + strand, within Dshi_2874 at 3028.435 kb on + strand, within Dshi_2874 at 3028.438 kb on - strand, within Dshi_2874 at 3028.761 kb on - strand, within Dshi_2874 at 3028.777 kb on + strand, within Dshi_2874 at 3028.818 kb on - strand, within Dshi_2874 at 3028.901 kb on + strand at 3028.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 3,026,558 - Dshi_2871 0.28 -0.2 3,026,565 + Dshi_2871 0.29 -0.2 3,026,592 + Dshi_2871 0.32 +0.3 3,026,700 + Dshi_2871 0.42 +0.5 3,026,741 + Dshi_2871 0.46 +0.2 3,026,867 - Dshi_2871 0.58 -0.6 3,026,886 - Dshi_2871 0.60 +0.6 3,027,032 - Dshi_2871 0.74 +0.3 3,027,041 - Dshi_2871 0.75 +0.2 3,027,131 + Dshi_2871 0.84 +0.6 3,027,131 + Dshi_2871 0.84 -0.1 3,027,188 + Dshi_2871 0.89 -0.7 3,027,211 + +1.4 3,027,344 - Dshi_2872 0.23 -1.3 3,027,401 - Dshi_2872 0.51 -0.5 3,027,575 - Dshi_2873 0.11 +0.2 3,027,684 - Dshi_2873 0.30 +0.6 3,027,793 + Dshi_2873 0.50 -0.4 3,027,793 + Dshi_2873 0.50 +0.6 3,027,878 - Dshi_2873 0.65 +0.7 3,027,880 - Dshi_2873 0.65 -0.6 3,028,005 - Dshi_2873 0.87 +0.8 3,028,077 + -0.4 3,028,090 + -1.4 3,028,205 + Dshi_2874 0.14 -0.5 3,028,296 + Dshi_2874 0.24 +0.2 3,028,430 + Dshi_2874 0.39 +0.2 3,028,435 + Dshi_2874 0.40 +0.1 3,028,438 - Dshi_2874 0.40 -0.2 3,028,761 - Dshi_2874 0.77 +0.2 3,028,777 + Dshi_2874 0.78 +0.4 3,028,818 - Dshi_2874 0.83 -0.1 3,028,901 + +0.4 3,028,909 - -0.4
Or see this region's nucleotide sequence