Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2728 and Dshi_2729 are separated by 78 nucleotides Dshi_2729 and Dshi_2730 are separated by 42 nucleotides Dshi_2730 and Dshi_2731 overlap by 1 nucleotides Dshi_2731 and Dshi_2732 are separated by 71 nucleotides Dshi_2732 and Dshi_2733 are separated by 112 nucleotides
Dshi_2728: Dshi_2728 - phosphoribosylamine--glycine ligase (RefSeq), at 2,890,448 to 2,891,710
_2728
Dshi_2729: Dshi_2729 - Ion transport 2 domain protein (RefSeq), at 2,891,789 to 2,892,655
_2729
Dshi_2730: Dshi_2730 - FG-GAP repeat domain protein (RefSeq), at 2,892,698 to 2,893,456
_2730
Dshi_2731: Dshi_2731 - ferredoxin (RefSeq), at 2,893,456 to 2,893,779
_2731
Dshi_2732: Dshi_2732 - nucleic acid binding OB-fold tRNA/helicase-type (RefSeq), at 2,893,851 to 2,894,264
_2732
Dshi_2733: Dshi_2733 - protease Do (RefSeq), at 2,894,377 to 2,895,882
_2733
Position (kb)
2892
2893
2894 Strain fitness (log2 ratio)
-1
0
1 at 2891.713 kb on - strand at 2891.753 kb on - strand at 2891.794 kb on + strand at 2891.794 kb on + strand at 2891.807 kb on - strand at 2891.828 kb on + strand at 2891.914 kb on - strand, within Dshi_2729 at 2891.934 kb on - strand, within Dshi_2729 at 2891.955 kb on + strand, within Dshi_2729 at 2891.955 kb on + strand, within Dshi_2729 at 2891.963 kb on - strand, within Dshi_2729 at 2891.963 kb on - strand, within Dshi_2729 at 2891.991 kb on - strand, within Dshi_2729 at 2892.302 kb on + strand, within Dshi_2729 at 2892.713 kb on + strand at 2892.795 kb on - strand, within Dshi_2730 at 2892.795 kb on - strand, within Dshi_2730 at 2892.861 kb on - strand, within Dshi_2730 at 2893.016 kb on - strand, within Dshi_2730 at 2893.019 kb on - strand, within Dshi_2730 at 2893.031 kb on + strand, within Dshi_2730 at 2893.145 kb on + strand, within Dshi_2730 at 2893.248 kb on - strand, within Dshi_2730 at 2893.955 kb on - strand, within Dshi_2732 at 2894.150 kb on + strand, within Dshi_2732 at 2894.253 kb on + strand at 2894.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,891,713 - +0.5 2,891,753 - -0.0 2,891,794 + -0.3 2,891,794 + -0.3 2,891,807 - +0.0 2,891,828 + +0.1 2,891,914 - Dshi_2729 0.14 +0.3 2,891,934 - Dshi_2729 0.17 -1.3 2,891,955 + Dshi_2729 0.19 -0.8 2,891,955 + Dshi_2729 0.19 +0.5 2,891,963 - Dshi_2729 0.20 +0.3 2,891,963 - Dshi_2729 0.20 +0.7 2,891,991 - Dshi_2729 0.23 -0.1 2,892,302 + Dshi_2729 0.59 -0.4 2,892,713 + +0.2 2,892,795 - Dshi_2730 0.13 +0.6 2,892,795 - Dshi_2730 0.13 +0.7 2,892,861 - Dshi_2730 0.21 +0.1 2,893,016 - Dshi_2730 0.42 -0.5 2,893,019 - Dshi_2730 0.42 +0.1 2,893,031 + Dshi_2730 0.44 -0.0 2,893,145 + Dshi_2730 0.59 +0.4 2,893,248 - Dshi_2730 0.72 -0.6 2,893,955 - Dshi_2732 0.25 -0.7 2,894,150 + Dshi_2732 0.72 +0.2 2,894,253 + -0.3 2,894,297 - +0.2
Or see this region's nucleotide sequence