Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2388 and Dshi_2389 are separated by 12 nucleotides Dshi_2389 and Dshi_2390 are separated by 92 nucleotides Dshi_2390 and Dshi_2391 are separated by 129 nucleotides
Dshi_2388: Dshi_2388 - glycosyl transferase family 2 (RefSeq), at 2,522,050 to 2,523,957
_2388
Dshi_2389: Dshi_2389 - transcriptional regulator, GntR family (RefSeq), at 2,523,970 to 2,524,611
_2389
Dshi_2390: Dshi_2390 - pyrimidine 5'-nucleotidase (RefSeq), at 2,524,704 to 2,525,351
_2390
Dshi_2391: Dshi_2391 - hypothetical protein (RefSeq), at 2,525,481 to 2,525,726
_2391
Position (kb)
2523
2524
2525 Strain fitness (log2 ratio)
-1
0
1 at 2523.042 kb on - strand, within Dshi_2388 at 2523.080 kb on - strand, within Dshi_2388 at 2523.141 kb on - strand, within Dshi_2388 at 2523.167 kb on + strand, within Dshi_2388 at 2523.215 kb on + strand, within Dshi_2388 at 2523.270 kb on + strand, within Dshi_2388 at 2523.368 kb on - strand, within Dshi_2388 at 2523.371 kb on + strand, within Dshi_2388 at 2523.507 kb on + strand, within Dshi_2388 at 2523.656 kb on - strand, within Dshi_2388 at 2523.883 kb on + strand at 2524.167 kb on + strand, within Dshi_2389 at 2524.264 kb on - strand, within Dshi_2389 at 2524.264 kb on - strand, within Dshi_2389 at 2524.284 kb on - strand, within Dshi_2389 at 2524.603 kb on - strand at 2524.735 kb on - strand at 2524.872 kb on + strand, within Dshi_2390 at 2525.003 kb on + strand, within Dshi_2390 at 2525.003 kb on + strand, within Dshi_2390 at 2525.149 kb on - strand, within Dshi_2390 at 2525.207 kb on + strand, within Dshi_2390 at 2525.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 2,523,042 - Dshi_2388 0.52 +0.1 2,523,080 - Dshi_2388 0.54 -0.2 2,523,141 - Dshi_2388 0.57 -0.2 2,523,167 + Dshi_2388 0.59 +0.1 2,523,215 + Dshi_2388 0.61 +0.6 2,523,270 + Dshi_2388 0.64 -0.3 2,523,368 - Dshi_2388 0.69 -0.1 2,523,371 + Dshi_2388 0.69 +0.4 2,523,507 + Dshi_2388 0.76 +0.4 2,523,656 - Dshi_2388 0.84 +0.2 2,523,883 + -0.1 2,524,167 + Dshi_2389 0.31 -0.4 2,524,264 - Dshi_2389 0.46 +0.2 2,524,264 - Dshi_2389 0.46 -0.0 2,524,284 - Dshi_2389 0.49 -1.0 2,524,603 - -0.2 2,524,735 - +0.1 2,524,872 + Dshi_2390 0.26 -1.2 2,525,003 + Dshi_2390 0.46 -0.2 2,525,003 + Dshi_2390 0.46 -0.1 2,525,149 - Dshi_2390 0.69 -0.3 2,525,207 + Dshi_2390 0.78 +0.0 2,525,428 + +0.1
Or see this region's nucleotide sequence