Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1881 and Dshi_1882 overlap by 4 nucleotides Dshi_1882 and Dshi_1883 are separated by 219 nucleotides Dshi_1883 and Dshi_1884 are separated by 129 nucleotides Dshi_1884 and Dshi_1885 are separated by 132 nucleotides
Dshi_1881: Dshi_1881 - hypothetical protein (RefSeq), at 1,958,592 to 1,959,968
_1881
Dshi_1882: Dshi_1882 - GCN5-related N-acetyltransferase (RefSeq), at 1,959,965 to 1,960,423
_1882
Dshi_1883: Dshi_1883 - AAA ATPase central domain protein (RefSeq), at 1,960,643 to 1,961,485
_1883
Dshi_1884: Dshi_1884 - transcriptional regulator, TraR/DksA family (RefSeq), at 1,961,615 to 1,962,088
_1884
Dshi_1885: Dshi_1885 - monooxygenase FAD-binding (RefSeq), at 1,962,221 to 1,963,390
_1885
Position (kb)
1960
1961
1962 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1959.922 kb on + strand at 1960.183 kb on - strand, within Dshi_1882 at 1960.305 kb on + strand, within Dshi_1882 at 1960.305 kb on + strand, within Dshi_1882 at 1960.313 kb on - strand, within Dshi_1882 at 1960.376 kb on + strand, within Dshi_1882 at 1960.416 kb on - strand at 1960.476 kb on + strand at 1960.504 kb on - strand at 1960.800 kb on - strand, within Dshi_1883 at 1960.878 kb on + strand, within Dshi_1883 at 1961.341 kb on - strand, within Dshi_1883 at 1961.362 kb on + strand, within Dshi_1883 at 1961.414 kb on + strand at 1961.493 kb on + strand at 1961.668 kb on - strand, within Dshi_1884 at 1961.782 kb on + strand, within Dshi_1884 at 1962.149 kb on + strand at 1962.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 1,959,922 + -2.9 1,960,183 - Dshi_1882 0.47 -3.1 1,960,305 + Dshi_1882 0.74 -2.2 1,960,305 + Dshi_1882 0.74 -1.1 1,960,313 - Dshi_1882 0.76 -1.5 1,960,376 + Dshi_1882 0.90 -1.9 1,960,416 - -0.5 1,960,476 + -0.7 1,960,504 - -0.6 1,960,800 - Dshi_1883 0.19 -0.2 1,960,878 + Dshi_1883 0.28 +0.8 1,961,341 - Dshi_1883 0.83 +0.6 1,961,362 + Dshi_1883 0.85 +0.3 1,961,414 + +0.6 1,961,493 + +0.0 1,961,668 - Dshi_1884 0.11 -1.5 1,961,782 + Dshi_1884 0.35 +1.8 1,962,149 + -0.6 1,962,157 - +0.1
Or see this region's nucleotide sequence