Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0658 and Dshi_0659 are separated by 177 nucleotides Dshi_0659 and Dshi_0660 are separated by 52 nucleotides
Dshi_0658: Dshi_0658 - ABC transporter related (RefSeq), at 661,169 to 662,770
_0658
Dshi_0659: Dshi_0659 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 662,948 to 664,309
_0659
Dshi_0660: Dshi_0660 - transcriptional regulator, Crp/Fnr family (RefSeq), at 664,362 to 665,111
_0660
Position (kb) 662
663
664
665 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 661.991 kb on - strand, within Dshi_0658 at 662.026 kb on + strand, within Dshi_0658 at 662.103 kb on + strand, within Dshi_0658 at 662.104 kb on - strand, within Dshi_0658 at 662.172 kb on + strand, within Dshi_0658 at 662.214 kb on - strand, within Dshi_0658 at 662.261 kb on - strand, within Dshi_0658 at 662.273 kb on + strand, within Dshi_0658 at 662.311 kb on + strand, within Dshi_0658 at 662.319 kb on - strand, within Dshi_0658 at 662.348 kb on - strand, within Dshi_0658 at 662.352 kb on + strand, within Dshi_0658 at 662.509 kb on - strand, within Dshi_0658 at 662.590 kb on + strand, within Dshi_0658 at 662.590 kb on + strand, within Dshi_0658 at 662.591 kb on + strand, within Dshi_0658 at 662.613 kb on + strand at 662.613 kb on + strand at 662.613 kb on + strand at 662.614 kb on + strand at 662.637 kb on + strand at 662.845 kb on + strand at 663.037 kb on + strand at 663.099 kb on - strand, within Dshi_0659 at 663.112 kb on - strand, within Dshi_0659 at 663.116 kb on + strand, within Dshi_0659 at 663.122 kb on - strand, within Dshi_0659 at 663.246 kb on - strand, within Dshi_0659 at 663.301 kb on + strand, within Dshi_0659 at 663.311 kb on - strand, within Dshi_0659 at 663.312 kb on + strand, within Dshi_0659 at 663.375 kb on - strand, within Dshi_0659 at 663.508 kb on + strand, within Dshi_0659 at 663.516 kb on - strand, within Dshi_0659 at 663.520 kb on + strand, within Dshi_0659 at 663.530 kb on + strand, within Dshi_0659 at 663.818 kb on + strand, within Dshi_0659 at 663.840 kb on + strand, within Dshi_0659 at 663.855 kb on + strand, within Dshi_0659 at 663.875 kb on + strand, within Dshi_0659 at 664.090 kb on - strand, within Dshi_0659 at 664.095 kb on - strand, within Dshi_0659 at 664.209 kb on + strand at 664.234 kb on + strand at 664.324 kb on - strand at 664.338 kb on - strand at 664.349 kb on - strand at 664.439 kb on - strand, within Dshi_0660 at 664.442 kb on + strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.450 kb on - strand, within Dshi_0660 at 664.474 kb on + strand, within Dshi_0660 at 664.727 kb on + strand, within Dshi_0660 at 664.916 kb on - strand, within Dshi_0660 at 665.294 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 661,991 - Dshi_0658 0.51 -2.8 662,026 + Dshi_0658 0.53 -0.5 662,103 + Dshi_0658 0.58 -1.4 662,104 - Dshi_0658 0.58 -1.5 662,172 + Dshi_0658 0.63 +0.0 662,214 - Dshi_0658 0.65 -1.1 662,261 - Dshi_0658 0.68 -2.3 662,273 + Dshi_0658 0.69 -2.0 662,311 + Dshi_0658 0.71 -1.8 662,319 - Dshi_0658 0.72 -1.8 662,348 - Dshi_0658 0.74 -1.1 662,352 + Dshi_0658 0.74 -2.9 662,509 - Dshi_0658 0.84 -0.4 662,590 + Dshi_0658 0.89 -2.5 662,590 + Dshi_0658 0.89 -1.1 662,591 + Dshi_0658 0.89 -1.4 662,613 + -3.3 662,613 + -0.8 662,613 + -1.0 662,614 + -2.1 662,637 + -1.8 662,845 + -0.2 663,037 + -1.9 663,099 - Dshi_0659 0.11 +0.3 663,112 - Dshi_0659 0.12 -0.4 663,116 + Dshi_0659 0.12 -1.1 663,122 - Dshi_0659 0.13 -2.2 663,246 - Dshi_0659 0.22 -0.1 663,301 + Dshi_0659 0.26 -0.5 663,311 - Dshi_0659 0.27 -0.6 663,312 + Dshi_0659 0.27 -0.5 663,375 - Dshi_0659 0.31 -0.9 663,508 + Dshi_0659 0.41 +0.5 663,516 - Dshi_0659 0.42 +0.2 663,520 + Dshi_0659 0.42 -1.3 663,530 + Dshi_0659 0.43 -1.4 663,818 + Dshi_0659 0.64 -0.1 663,840 + Dshi_0659 0.65 -0.3 663,855 + Dshi_0659 0.67 -0.1 663,875 + Dshi_0659 0.68 -0.4 664,090 - Dshi_0659 0.84 -0.1 664,095 - Dshi_0659 0.84 +0.0 664,209 + -0.2 664,234 + -0.4 664,324 - -1.1 664,338 - +0.0 664,349 - -0.4 664,439 - Dshi_0660 0.10 +0.6 664,442 + Dshi_0660 0.11 +0.9 664,450 - Dshi_0660 0.12 -0.9 664,450 - Dshi_0660 0.12 +1.0 664,450 - Dshi_0660 0.12 -0.2 664,474 + Dshi_0660 0.15 +0.3 664,727 + Dshi_0660 0.49 -0.1 664,916 - Dshi_0660 0.74 +0.7 665,294 + +1.2
Or see this region's nucleotide sequence